BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0365200 Os05g0365200|AK120909
         (535 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37440.1  | chr4:17601647-17603846 FORWARD LENGTH=472           78   1e-14
AT3G50040.1  | chr3:18549489-18551019 REVERSE LENGTH=422           68   1e-11
AT3G59670.1  | chr3:22040485-22042380 FORWARD LENGTH=518           57   3e-08

>AT4G37440.1 | chr4:17601647-17603846 FORWARD LENGTH=472
          Length = 471

 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 4/119 (3%)

Query: 126 SSAPRMVRRRQVTAEWRKIVGP-IMWRCQWLELHMKNLLSQVAKYDRELAIINHEKDLQL 184
           +S P  VR+R++T  WR+ V P +MWRC+W+EL  K L +Q  KYD+E+      K L+L
Sbjct: 121 TSLPLWVRKRKLTDHWRRFVQPTLMWRCKWIELKYKELQNQAQKYDKEVEEYYQAKKLEL 180

Query: 185 EMVKAD--GPKSEPGKLYPQSHERIIMXXXXXXXDEDTVDTSLYLKRHPALSYYENKNS 241
           E VK++  G K+ P  L   + +  +M        E+T D + Y   H   SYY+ + S
Sbjct: 181 ENVKSEELGVKALPP-LPCYTQKTRLMKRKTRKRVEETADVTSYASNHNLFSYYDCRKS 238



>AT3G50040.1 | chr3:18549489-18551019 REVERSE LENGTH=422
          Length = 421

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 27/183 (14%)

Query: 134 RRQVTAEWRKIVGPIMWRCQWLELHMKNLLSQVAKYDRELAIINHEKDLQLEMVKADGPK 193
           +++    WR++  PIMWRC+W+EL +K + SQ   Y++E+      K   LE  K +G  
Sbjct: 108 KKKTNDRWRRLTKPIMWRCKWIELKVKEIQSQARGYEKEVKDYYLTKQFDLEKSKLEGFD 167

Query: 194 SEPGKLYPQSHERIIMXXXXXXXDEDTVDTSLYLKRHPALSYYENKNSGVQTDGPLVNGG 253
            +       +  R +         E+T D + Y+  H   S Y +K   V   G  ++  
Sbjct: 168 GKSIPFRENNQRRNVFKRGRRKRVEETTDVAAYMSNHNLFS-YADKRVPVNVKGQYLDSD 226

Query: 254 F--------------DSSVVEDIESTDDALVENDRVFEQYSLREILLTVDDVQSRILSLQ 299
           F              D S++ +++ +DD L             + L  +D+ Q +   L+
Sbjct: 227 FGTGRKATGKQDAIEDDSLISELDCSDDVLA------------KFLCKIDEAQGKARRLR 274

Query: 300 GRL 302
            R+
Sbjct: 275 KRV 277



>AT3G59670.1 | chr3:22040485-22042380 FORWARD LENGTH=518
          Length = 517

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 20/214 (9%)

Query: 109 EVDSPFLGPTRTG-ADRASSAPRMVRRRQVTAEWRKIVGPIMWRCQWLELHMKNLLSQVA 167
           EV+S +   T  G A  + S+    R++++T  WR+ + P+MWR +W+EL ++ L S+  
Sbjct: 106 EVESHYWDETDLGPAYDSFSSIFHFRKKRLTNHWRRFIRPLMWRSKWVELRIRELESRAL 165

Query: 168 KYDRELAIINHEK-----DLQLEMVKADGPKSEPGKLYPQSHERIIMXXXXXXXDEDTVD 222
           +Y +EL + + EK     D  +     +G KS P    P   +R           E T D
Sbjct: 166 EYPKELELYDQEKLEANIDPSVLESCGEGIKSLPFS-NPCYKKRAAKKRRKRKKVESTDD 224

Query: 223 TSLYLKRHPALSYYENKNSGVQTDGPLVNGGF--------DSSVVEDIESTDDALVENDR 274
            + Y+  H   SY E K   + +DG  +   F        DS+   D++  D      D 
Sbjct: 225 IASYMACHNLFSYIETKR--LSSDGMGLADDFGDAKDPRSDSNEPVDLDDADSLFHHRDG 282

Query: 275 VFEQYSLREILLTVDDVQSRILSLQGRLSNARSK 308
                 L E+L  ++ V S++  L+ ++    SK
Sbjct: 283 ---DSVLEEVLWKIELVHSQVHRLKTQVDVVLSK 313



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,787,539
Number of extensions: 430777
Number of successful extensions: 963
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 960
Number of HSP's successfully gapped: 3
Length of query: 535
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 432
Effective length of database: 8,282,721
Effective search space: 3578135472
Effective search space used: 3578135472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 114 (48.5 bits)