BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0358000 Os05g0358000|AK101263
(233 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G49230.1 | chr5:19959048-19960422 REVERSE LENGTH=212 131 3e-31
AT3G05700.1 | chr3:1682432-1684323 REVERSE LENGTH=224 116 1e-26
AT5G26990.1 | chr5:9491366-9493639 FORWARD LENGTH=223 112 1e-25
AT1G56280.1 | chr1:21073366-21074725 REVERSE LENGTH=201 99 1e-21
AT1G02750.1 | chr1:602673-604134 FORWARD LENGTH=222 81 5e-16
AT4G02200.3 | chr4:972776-974203 FORWARD LENGTH=229 78 3e-15
AT3G06760.2 | chr3:2132971-2134355 FORWARD LENGTH=235 71 6e-13
>AT5G49230.1 | chr5:19959048-19960422 REVERSE LENGTH=212
Length = 211
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 98/177 (55%), Gaps = 10/177 (5%)
Query: 54 YNCPFCGEDFDFVAFCCHVDDEHAVEAKSGVCPICATRVGVDLIGHLTMQHGSYFKMQRR 113
+ CPFC ++FD V CCH+D H VEAK+GVCP+C +VG+D++GH+T QHG+ FK+QRR
Sbjct: 43 FMCPFCADEFDIVGLCCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHITTQHGNVFKVQRR 102
Query: 114 RRVRKIXXXXXXXXXXXXXXXXXXXXQSFLGGSSYVSNPPAAAPDPFLSSLICSLPVAEP 173
RR+RK QS LGGSS DP LSS + P A P
Sbjct: 103 RRLRK--GGYSSTYLTLKKELREANLQS-LGGSSTFIPSSNIDSDPLLSSFMFKPPSAIP 159
Query: 174 SKDLHSDSSDNNFLLNKFPDDKTAERAEPSLSEKDQKERAQRSKFVRGLVLSTIFED 230
++ + + P D + + + + +E+A++SKFVRGL+ ST+ ED
Sbjct: 160 -------ITEGDSVAQVSPKDTSKSKIQQESFSNEDQEKAKKSKFVRGLLWSTMLED 209
>AT3G05700.1 | chr3:1682432-1684323 REVERSE LENGTH=224
Length = 223
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 102/182 (56%), Gaps = 9/182 (4%)
Query: 54 YNCPFCGEDFDFVAFCCHVDDEHAVEAKSGVCPICATRVGVDLIGHLTMQHGSYFKMQRR 113
+ CPFC + FD V+ CCH+D++H +EAK+GVCP+CA RVGVD++ H+T+QH + FKM R+
Sbjct: 44 FACPFCSDYFDIVSLCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHRK 103
Query: 114 RRVRKIXXXXXXXXXXXXXXXXXXXXQSFLGGSSYVSNPPA---AAPDPFLSSLICSLPV 170
R+ R+ QS GGSS + + + A DP LSS I P+
Sbjct: 104 RKPRR--GGSYSTLSILRREFPDGNFQSLFGGSSCIVSSSSSSNVAADPLLSSFIS--PI 159
Query: 171 AEPSKDLHSDSSDNNFLLNKFPDDKTAER--AEPSLSEKDQKERAQRSKFVRGLVLSTIF 228
A+ S S + K E+ + SLS +D K++ +RS+FVR L+ STI
Sbjct: 160 ADGFFTTESCISAETGPVKKTTIQCLPEQNAKKTSLSAEDHKQKLKRSEFVRELLSSTIL 219
Query: 229 ED 230
+D
Sbjct: 220 DD 221
>AT5G26990.1 | chr5:9491366-9493639 FORWARD LENGTH=223
Length = 222
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 105/183 (57%), Gaps = 12/183 (6%)
Query: 54 YNCPFCGEDFDFVAFCCHVDDEHAVEAKSGVCPICATRVGVDLIGHLTMQHGSYFKMQRR 113
Y CPFC + FD V+ CCH+D++H ++AK+GVCPICA +V D+I H+T+QH + FK+ R+
Sbjct: 44 YACPFCSDYFDIVSLCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVTRK 103
Query: 114 RRVRKIXXXXXXXXXXXXXXXXXXXXQSFLGGS--SYVSNPPAAAPDPFLSSLICSLP-- 169
R+ R+ QS G+ + S+ + A DP LSS I +
Sbjct: 104 RKSRR--GGAQSMLSILKREFPDGNFQSLFEGTSRAVSSSSASIAADPLLSSFISPMADD 161
Query: 170 --VAEPSKDLHSDSSDNNFLLNKFPDDKTAERAEPSLSEKDQKERAQRSKFVRGLVLSTI 227
++E S L +D+S LN+ ++ E+ SLS +D +E+ ++S+FV+G++ S I
Sbjct: 162 FFISESS--LCADTSSAKKTLNQSLPERNVEKQ--SLSAEDHREKLKQSEFVQGILSSMI 217
Query: 228 FED 230
ED
Sbjct: 218 LED 220
>AT1G56280.1 | chr1:21073366-21074725 REVERSE LENGTH=201
Length = 200
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 99/212 (46%), Gaps = 29/212 (13%)
Query: 24 LQARYDLYMGFXXXXXXXXXXXXXXXXXXXYNCPFCGEDFDFVAFCCHVDDEHAVEAKSG 83
L++R ++ MGF + CPFC E +D + CCH+DDEH +E+K+
Sbjct: 12 LRSRSEMLMGFEEIDGDDDFQEE-------FACPFCAESYDIIGLCCHIDDEHTLESKNA 64
Query: 84 VCPICATRVGVDLIGHLTMQHGSYFKMQRRRRVRKIXXXXXXXXXXXXXXXXXXXXQSFL 143
VCP+C+ +VGVD++ H F M R+R+ RK Q L
Sbjct: 65 VCPVCSLKVGVDIVAH------KRFTMGRKRKSRK--SGTNSTLSLLRKELREGDLQRLL 116
Query: 144 GGSSYV-SNPPAAAPDPFLSSLICSLPVAEPSKDLHSDSSDNNFLLNKFPDDKTAERAE- 201
G +S S + PDP LSS I P++ S SS +DK ER
Sbjct: 117 GFTSRNGSVASSVTPDPLLSSFI------SPTR---SQSSPAPRQTKNVSEDKQIERKRQ 167
Query: 202 ---PSLSEKDQKERAQRSKFVRGLVLSTIFED 230
+S KD++ER +S+FV+ L+ S IF++
Sbjct: 168 VFISPVSLKDREERRHKSEFVQRLLSSAIFDE 199
>AT1G02750.1 | chr1:602673-604134 FORWARD LENGTH=222
Length = 221
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 12/180 (6%)
Query: 54 YNCPFCGEDFDFVAFCCHVDDEHAVEAKSGVCPICATRVGVDLIGHLTMQHGSYFKMQRR 113
Y CPFC D+D V C H+D+EH EA +G+CP+C+ RV + ++ H+T H K +++
Sbjct: 47 YPCPFCASDYDLVELCHHIDEEHRHEANNGICPVCSKRVKMHMVDHITSHHRDVLKSEQK 106
Query: 114 RRVRKIXXXXXXXXXXXXXXXXXXXXQSFLGGSSYVSNPPAAAPDPFLSSLICSLPVAEP 173
+ S +VS D FL S I + +
Sbjct: 107 EMSYREDPYLSDKYLQPHLDELPPSMNHHQHPSKHVS-------DQFL-SFINNSALPNQ 158
Query: 174 SKDLHSDSSDNNFLLNKFPDDKTAERAEPS--LSEKDQKERAQRSKFVRGLVLSTIFEDD 231
+K + DSS + N D A+ S LS+ D+ E+A++ +FV+GL+ S +F+D+
Sbjct: 159 TKLVLPDSSVED--KNPIKDSSAAKEGTSSCPLSDSDKLEKAKKCEFVQGLLSSAMFDDE 216
>AT4G02200.3 | chr4:972776-974203 FORWARD LENGTH=229
Length = 228
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 35/196 (17%)
Query: 54 YNCPFCGEDFDFVAFCCHVDDEHAVEAKSG--------------VCPICATRVGVDLIGH 99
Y CPFC +D+D V C H+D+EH ++A +G +CP+C+ RV + ++ H
Sbjct: 43 YPCPFCSDDYDLVELCHHIDEEHQLDANNGFLHEAVSCKFRLFIICPVCSRRVKMHMVDH 102
Query: 100 LTMQHGSYFKMQRRRRVRKIXXXXXXXXXXXXXXXXXXXXQSFLGGSSYVSNPPAAAPDP 159
+T QH FK R+ K QS + ++ + DP
Sbjct: 103 ITTQHRDVFK-----RLYK------DESYSAFSPGTRKYLQSLIDEPLSTNHTSKSVLDP 151
Query: 160 FLSSLICSLPVAEPSKDLHSDSS------DNNFLLNKFPDDKTAERAEPSLSEKDQKERA 213
L S I + P + SK + DSS DN+ + + +K E P LS+ + E+A
Sbjct: 152 LL-SFIYNPPSPKKSKLVQPDSSSEASMEDNSLIRDS--TEKDWESPSP-LSDTELLEKA 207
Query: 214 QRSKFVRGLVLSTIFE 229
++ +FV+GL+ S IF+
Sbjct: 208 KKREFVQGLISSAIFD 223
>AT3G06760.2 | chr3:2132971-2134355 FORWARD LENGTH=235
Length = 234
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 92/208 (44%), Gaps = 51/208 (24%)
Query: 54 YNCPFCGEDFDFVAFCCHVDDEHAVEAKSGV-----------CPI----CATRVGV-DLI 97
+ CPFC EDFD V CCH+D+EH VEAK+GV C C + +G+ L
Sbjct: 47 FICPFCAEDFDIVGLCCHIDEEHPVEAKNGVDQFFALVVIQCCNFWFIPCESNLGIFRLF 106
Query: 98 GHLTM------------QHGSYFKMQRRRRVRKIXXXXXXXXXXXXXXXXXXXXQSFLGG 145
G + +Y +++ R + QS LGG
Sbjct: 107 GRSVLYALRGRRLRRGGYSSTYLALKKELREANL--------------------QSLLGG 146
Query: 146 SSYVSNPPAAAPDPFLSSLICSLPVAEPSKDLHSDSSDNNFLLNKFPDDKTAER--AEPS 203
SS ++ DP LSS + + P S + + K ++ +R E
Sbjct: 147 SSSFTSSTNIDSDPLLSSFMFNSPSVNQSANKSATPVTVGNAATKVSIKESLKRDIQEAP 206
Query: 204 LSEKDQKERAQRSKFVRGLVLSTIFEDD 231
LS +DQ E+A++S+FVRGL+LST+ EDD
Sbjct: 207 LSGEDQ-EKAKKSEFVRGLLLSTMLEDD 233
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,259,662
Number of extensions: 154190
Number of successful extensions: 536
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 8
Length of query: 233
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 138
Effective length of database: 8,502,049
Effective search space: 1173282762
Effective search space used: 1173282762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)