BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0357800 Os05g0357800|AK060514
         (404 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80950.1  | chr1:30412653-30414935 REVERSE LENGTH=399          394   e-110
AT2G45670.1  | chr2:18815070-18818382 REVERSE LENGTH=540          141   6e-34
AT5G60620.1  | chr5:24367266-24369647 FORWARD LENGTH=377           61   1e-09

>AT1G80950.1 | chr1:30412653-30414935 REVERSE LENGTH=399
          Length = 398

 Score =  394 bits (1011), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/282 (65%), Positives = 225/282 (79%), Gaps = 14/282 (4%)

Query: 136 DGYARLEGWRREGVVRCGRALARAMLFVFGFYWIREYDC--RFPDAEDEHQEQSKELG-- 191
           + YA +EGW+R  +VR GR L+R +LFVFGFYWI E  C  R  D +   +  S E+   
Sbjct: 118 EDYAHMEGWKRTVIVRSGRFLSRVLLFVFGFYWIHE-SCPDRDSDMDSNPKTTSTEINQK 176

Query: 192 ---------RPGAVVSNHVSYVDILYHMSSSFPSFVAKRSVARLPMVGLISKCLGCIFVQ 242
                    RPGA+VSNHVSY+DILYHMS+SFPSFVAKRSV +LP+VGLISKCLGC++VQ
Sbjct: 177 GEAATEEPERPGAIVSNHVSYLDILYHMSASFPSFVAKRSVGKLPLVGLISKCLGCVYVQ 236

Query: 243 RESKTSDFKGVSGAVTERIQRAHQQKNSPMMLLFPEGTTTNGDYLLPFKTGAFLAKAPVK 302
           RE+K+ DFKGVSG V ER++ AH  K++P ++LFPEGTTTNGDYLL FKTGAFLA  PV 
Sbjct: 237 REAKSPDFKGVSGTVNERVREAHSNKSAPTIMLFPEGTTTNGDYLLTFKTGAFLAGTPVL 296

Query: 303 PVILRYPYKRFSPAWDSMSGARHVFLLLCQFVNNLEVIHLPVYYPSEQEKEDPKLYANNV 362
           PVIL+YPY+RFS AWD++SGARH+  LLCQ VN+LEVI LPVYYPS++EK+DPKLYA+NV
Sbjct: 297 PVILKYPYERFSVAWDTISGARHILFLLCQVVNHLEVIRLPVYYPSQEEKDDPKLYASNV 356

Query: 363 RKLMAVEGNLILSDLGLAEKRVYHAALNGNNSLPRALHQKDD 404
           RKLMA EGNLILS+LGL++KR+YHA LNGN S  R  HQK++
Sbjct: 357 RKLMATEGNLILSELGLSDKRIYHATLNGNLSQTRDFHQKEE 398



>AT2G45670.1 | chr2:18815070-18818382 REVERSE LENGTH=540
          Length = 539

 Score =  141 bits (356), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 132/257 (51%), Gaps = 26/257 (10%)

Query: 141 LEGWR---------REGVVRCGRALARAMLFVFGFYWIREYDCRFPDAEDEHQEQSKELG 191
           L GW+         R  ++   R   R +LF FG+ WIR           + +   +E+ 
Sbjct: 122 LAGWKDKENPMPLWRCRIMWITRICTRCILFSFGYQWIRR----------KGKPARREIA 171

Query: 192 RPGAVVSNHVSYVDILYHMSSSFPSFVAKRSVARLPMVGLISKCLGCIFVQRESKTSDFK 251
               VVSNHVSY++ +++     P+ VA  S   LP VG I + +  I+V R S+TS   
Sbjct: 172 --PIVVSNHVSYIEPIFYFYELSPTIVASESHDSLPFVGTIIRAMQVIYVNRFSQTSRKN 229

Query: 252 GVSGAVTERIQRAHQQKNSPMMLLFPEGTTTNGDYLLPFKTGAFLAKAPVKPVILRYPYK 311
            V       I+R       P +LLFPEGTTTNG  L+ F+ GAF+   P++PV++RYP+ 
Sbjct: 230 AV-----HEIKRKASCDRFPRLLLFPEGTTTNGKVLISFQLGAFIPGYPIQPVVVRYPHV 284

Query: 312 RFSPAWDSMSGARHVFLLLCQFVNNLEVIHLPVYYPSEQEKEDPKLYANNVRKLMAVEGN 371
            F  +W ++S    +F +  QF N +EV +LPV YPSE++K++    +      +A   N
Sbjct: 285 HFDQSWGNISLLTLMFRMFTQFHNFMEVEYLPVIYPSEKQKQNAVRLSQKTSHAIATSLN 344

Query: 372 LILSDLGLAEKRVYHAA 388
           ++ +    A+  + + A
Sbjct: 345 VVQTSHSFADLMLLNKA 361



>AT5G60620.1 | chr5:24367266-24369647 FORWARD LENGTH=377
          Length = 376

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 15/187 (8%)

Query: 192 RPGAV-VSNHVSYVD-ILYHMSSSFPSFVAKRSVARLPMVGLISKCLGCIFVQRESKTSD 249
           RP  V V+NH S +D I+    ++F   + K       +   I + +GCI+  R S+  D
Sbjct: 162 RPKQVYVANHTSMIDFIVLEQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNR-SEAKD 220

Query: 250 FKGVSGAVTERIQRAHQQKNSPMMLLFPEGTTTNGDYLLPFKTGAFLAKAPVKPVILRYP 309
            + V+  + + +Q A    +S  +L+FPEGT  N +Y + FK GAF     V P+ ++Y 
Sbjct: 221 REIVAKKLRDHVQGA----DSNPLLIFPEGTCVNNNYTVMFKKGAFELDCTVCPIAIKYN 276

Query: 310 YKRFSPAWDS--MSGARHVFLLLCQFVNNLEVIHL--PVYYPSEQEKEDPKLYANNVRKL 365
                  W+S   S   H+  L+  +    EV +L      P E   E    +A  VR +
Sbjct: 277 KIFVDAFWNSRKQSFTMHLLQLMTSWAVVCEVWYLEPQTIRPGETGIE----FAERVRDM 332

Query: 366 MAVEGNL 372
           +++   L
Sbjct: 333 ISLRAGL 339



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,222,801
Number of extensions: 282230
Number of successful extensions: 607
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 605
Number of HSP's successfully gapped: 3
Length of query: 404
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 303
Effective length of database: 8,337,553
Effective search space: 2526278559
Effective search space used: 2526278559
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)