BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0355900 Os05g0355900|AK063096
         (209 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49350.1  | chr5:20009834-20011095 REVERSE LENGTH=303           87   4e-18
AT1G56320.1  | chr1:21085722-21086459 REVERSE LENGTH=164           79   2e-15

>AT5G49350.1 | chr5:20009834-20011095 REVERSE LENGTH=303
          Length = 302

 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 63/104 (60%), Gaps = 1/104 (0%)

Query: 35  EMFEKACHCFDDHNVYSECKEELRLGVEGAFHVGKESVDEYCGGPCLMETKMALQCVEEV 94
           E+  KA  C ++ ++Y EC E  RL + G  ++     +E+C GPC  ET +AL C+EE+
Sbjct: 179 EIVAKALECLNEKHIYRECDESWRLTLNGDLNIPLGRTEEFCEGPCFSETHLALNCIEEI 238

Query: 95  AHDGFRFYSGASLPAVKAALDTGCSYTPDRGTFEIRERKQCGDE 138
            H  +RF++ A++  ++  L +GCSY P+RG F + E  +  +E
Sbjct: 239 IHH-YRFFNRATIHDIRETLKSGCSYGPERGVFNVLEHIEDEEE 281



>AT1G56320.1 | chr1:21085722-21086459 REVERSE LENGTH=164
          Length = 163

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 36  MFEKACHCFDDHNVYSECKEELRLGVEGAFHVGKESVDEYCGGPCLMETKMALQCVEEVA 95
           + ++A  CF+++ +Y  C E  RL  +G F V  E  D +C GPC  ET++ L C+  V 
Sbjct: 39  LVQRAAFCFNNNLLYRGCNEAFRLNQQGEFKVPPEETDRFCNGPCSAETELVLTCINSVM 98

Query: 96  HDGFRFYSGASLPAVKAALDTGCSYTPDRGTFEIRERKQ 134
            D F FY+ A+   V+ AL  GCS +  RG F + +  Q
Sbjct: 99  SD-FVFYNRATPRDVRNALRGGCSSSFTRGNFNVGDYAQ 136



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.139    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,120,549
Number of extensions: 156385
Number of successful extensions: 383
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 2
Length of query: 209
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 115
Effective length of database: 8,529,465
Effective search space: 980888475
Effective search space used: 980888475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)