BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0351500 Os05g0351500|AK108857
         (187 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58575.1  | chr5:23674399-23675224 FORWARD LENGTH=182           81   4e-16

>AT5G58575.1 | chr5:23674399-23675224 FORWARD LENGTH=182
          Length = 181

 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 10  SPRSQFALACFEELLETAVVDVASECHRIARLGLDRGVDXXXXXXXXXXXXDHPXXXXXX 69
           S  +Q +   F +L+++ + DVASECHR+ARLGLDR +D                     
Sbjct: 9   SSHAQLSSQIFLDLVDSVIADVASECHRVARLGLDRDLDIVEEELRLSV---EARAKIAD 65

Query: 70  XXXXXXXXXXXXXXXXXQVLPAVAADLVDCMNCGRPVAAGRFAPHLEKCM 119
                            Q  P VA+++ +CMNCGR + AGRFAPHLEKCM
Sbjct: 66  PSNNLETNTKYVVDIFGQTHPPVASEVFNCMNCGRQIVAGRFAPHLEKCM 115



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,461,056
Number of extensions: 52379
Number of successful extensions: 91
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 187
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 94
Effective length of database: 8,556,881
Effective search space: 804346814
Effective search space used: 804346814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)