BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0345500 Os05g0345500|AK121789
         (152 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30600.5  | chr2:13037410-13041475 FORWARD LENGTH=856          228   1e-60

>AT2G30600.5 | chr2:13037410-13041475 FORWARD LENGTH=856
          Length = 855

 Score =  228 bits (580), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 99/145 (68%), Positives = 114/145 (78%)

Query: 8   QVTASSPNSRYTDPKALVSKNYQATCFAGPRLEDGKMCSWWMVDIGPDHQLMCNYYTVRQ 67
            +T+SSP SR+TDPKAL SK Y  T FAGPR+EDG + SWW+VD+G +HQLMCNYYT RQ
Sbjct: 711 NITSSSPTSRFTDPKALASKAYAGTSFAGPRMEDGHISSWWVVDLGEEHQLMCNYYTFRQ 770

Query: 68  DGSATFMRSWVLQGSMDGRSWTSLHVHEDDQTICQPGQFASWPITGQTALLPFRFFRVML 127
           DGS  F R W  QGSMDG++WT L VHEDDQT+C+ GQFASWPIT   ALLPFRFFR++L
Sbjct: 771 DGSRAFTRFWKFQGSMDGKTWTDLRVHEDDQTMCKAGQFASWPITAANALLPFRFFRLVL 830

Query: 128 TAPATGVSNTWNLCICFLELYGYFR 152
           T P    S  WN CIC+LELYGYFR
Sbjct: 831 TGPTADTSTPWNFCICYLELYGYFR 855



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.135    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,788,243
Number of extensions: 145874
Number of successful extensions: 290
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 62
Effective length of database: 8,639,129
Effective search space: 535625998
Effective search space used: 535625998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 107 (45.8 bits)