BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0345100 Os05g0345100|J065191P08
(99 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G51670.1 | chr3:19168912-19170848 FORWARD LENGTH=410 115 5e-27
AT1G30690.1 | chr1:10888284-10890085 FORWARD LENGTH=541 75 7e-15
AT1G22530.1 | chr1:7955773-7958326 REVERSE LENGTH=684 70 3e-13
AT1G72160.1 | chr1:27153823-27155609 REVERSE LENGTH=491 69 6e-13
AT4G09160.1 | chr4:5839761-5842158 FORWARD LENGTH=669 68 8e-13
AT1G72150.1 | chr1:27148558-27150652 FORWARD LENGTH=574 67 2e-12
>AT3G51670.1 | chr3:19168912-19170848 FORWARD LENGTH=410
Length = 409
Score = 115 bits (288), Expect = 5e-27, Method: Composition-based stats.
Identities = 54/86 (62%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Query: 13 QAGATITWDLVVGGWELEYGAEYVPAAEDSYTLCVERTRKVPAAADEPVHNAFTAREAGK 72
+ GATITWD+VVGGW+LEY AE+VP AE+SY + VE+ +K+ A DE V N+FT EAGK
Sbjct: 322 EGGATITWDIVVGGWDLEYSAEFVPNAEESYAIVVEKPKKM-KATDEAVCNSFTTVEAGK 380
Query: 73 MVLSIDNSGSRKRKVAAYRYFVRKPS 98
++LS+DN+ SRK+KVAAYRY VRK +
Sbjct: 381 LILSVDNTLSRKKKVAAYRYTVRKST 406
>AT1G30690.1 | chr1:10888284-10890085 FORWARD LENGTH=541
Length = 540
Score = 75.1 bits (183), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 13 QAGATITWDLVVGGWELEYGAEYVPAAEDSYTLCVERTRKVPAAADEPVHNAFTAREAGK 72
+ T+ WD+ V GWE+ Y E+VP E +YT+ V++ +K+ A + P+ N+F +AGK
Sbjct: 455 ETEGTLVWDIAVLGWEVNYKEEFVPTEEGAYTVIVQKVKKM-GANEGPIRNSFKNSQAGK 513
Query: 73 MVLSIDNSGSRKRKVAAYRYFVRKPSA 99
+VL++DN +K+KV YRY + S+
Sbjct: 514 IVLTVDNVSGKKKKV-LYRYRTKTESS 539
>AT1G22530.1 | chr1:7955773-7958326 REVERSE LENGTH=684
Length = 683
Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 53/74 (71%), Gaps = 2/74 (2%)
Query: 15 GATITWDLVVGGWELEYGAEYVPAAEDSYTLCVERTRKVPAAADEPV-HNAFTAREAGKM 73
G+T++W+L V G ++ YGA++ P+ E SYT+ V + RKV DEPV ++F A EAGK+
Sbjct: 603 GSTLSWELRVLGADVSYGAQFEPSNEASYTVIVSKNRKV-GLTDEPVITDSFKASEAGKV 661
Query: 74 VLSIDNSGSRKRKV 87
V++IDN +K+KV
Sbjct: 662 VITIDNQTFKKKKV 675
>AT1G72160.1 | chr1:27153823-27155609 REVERSE LENGTH=491
Length = 490
Score = 68.6 bits (166), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 56/79 (70%), Gaps = 3/79 (3%)
Query: 18 ITWDLVVGGWELEYGAEYVPAAEDSYTLCVERTRKVPAAADEPV-HNAFTAREAGKMVLS 76
+ W++ V GWE+ Y AE+VP +D+YT+ +++ RK+ +DEPV ++F E GK++L+
Sbjct: 412 LVWEIRVTGWEVSYKAEFVPEEKDAYTVVIQKPRKM-RPSDEPVLTHSFKVNELGKVLLT 470
Query: 77 IDNSGSRKRKVAAYRYFVR 95
+DN S+K+K+ YR+ V+
Sbjct: 471 VDNPTSKKKKL-VYRFNVK 488
>AT4G09160.1 | chr4:5839761-5842158 FORWARD LENGTH=669
Length = 668
Score = 68.2 bits (165), Expect = 8e-13, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 17 TITWDLVVGGWELEYGAEYVPAAEDSYTLCVERTRKVPAAADEPVHNAFTAREAGKMVLS 76
TI W++ V GWE+ YGAE+VP ++ YT+ +++ RK+ A + V ++F E G+++L+
Sbjct: 586 TIVWEIRVVGWEVSYGAEFVPENKEGYTVIIQKPRKMTAKNELVVSHSFKVGEVGRILLT 645
Query: 77 IDNSGSRKRKVAAYRYFVR 95
+DN S K K+ YR+ V+
Sbjct: 646 VDNPTSTK-KMLIYRFKVK 663
>AT1G72150.1 | chr1:27148558-27150652 FORWARD LENGTH=574
Length = 573
Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Query: 15 GATITWDLVVGGWELEYGAEYVPAAEDSYTLCVERTRKVPAAADEPV-HNAFTAREAGKM 73
T++W+L V G ++ YGA++ P E SY + V +TRK+ + DEPV ++F E GK+
Sbjct: 494 ACTLSWELRVLGADVSYGAQFEPTTEGSYAVIVSKTRKI-GSTDEPVITDSFKVGEPGKI 552
Query: 74 VLSIDNSGSRKRKVAAYRY 92
V++IDN S+K+KV YR+
Sbjct: 553 VITIDNQTSKKKKV-LYRF 570
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,054,963
Number of extensions: 72323
Number of successful extensions: 153
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 6
Length of query: 99
Length of database: 11,106,569
Length adjustment: 69
Effective length of query: 30
Effective length of database: 9,214,865
Effective search space: 276445950
Effective search space used: 276445950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)