BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0342100 Os05g0342100|AK111106
         (177 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01740.1  | chr5:280793-281281 FORWARD LENGTH=163               63   6e-11

>AT5G01740.1 | chr5:280793-281281 FORWARD LENGTH=163
          Length = 162

 Score = 63.2 bits (152), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 43/113 (38%), Gaps = 2/113 (1%)

Query: 22  VESLYXXXXXXXXXXXXXXXXXXXXWWFHGPRRCEHMRRRLTGXXXXXXXXXFVFXXXXX 81
           +E LY                    WWFHGP  C+HM R LTG         F F     
Sbjct: 22  IELLYKALQQGDTSTVTKVVASDVEWWFHGPHDCQHMMRLLTGEPPRQVS--FRFEPSSV 79

Query: 82  XXXXXXXXXXXXXXXXXXRAYWVHAWAVEGGRITRLREYFNTSVTVRDVGGGG 134
                             R YWVH W ++ G +T LREYFNT +TV D   G 
Sbjct: 80  QVVVPGHDCVIAEGWEGSRVYWVHVWKLKDGVVTELREYFNTWLTVTDYSLGA 132



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.329    0.143    0.513 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,082,608
Number of extensions: 59012
Number of successful extensions: 128
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 85
Effective length of database: 8,584,297
Effective search space: 729665245
Effective search space used: 729665245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 108 (46.2 bits)