BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0324600 Os05g0324600|AK107504
(260 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G06920.1 | chr1:2124854-2125801 REVERSE LENGTH=316 64 1e-10
AT5G58360.1 | chr5:23590079-23590969 REVERSE LENGTH=297 59 2e-09
AT2G30400.1 | chr2:12956592-12957554 FORWARD LENGTH=321 56 2e-08
AT5G01840.1 | chr5:324552-325364 FORWARD LENGTH=271 55 5e-08
AT5G19650.1 | chr5:6639632-6640297 REVERSE LENGTH=222 53 1e-07
AT4G18830.1 | chr4:10337449-10338498 FORWARD LENGTH=350 52 2e-07
>AT1G06920.1 | chr1:2124854-2125801 REVERSE LENGTH=316
Length = 315
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 188 FAVVKASAEPARDFRESMVEMVVGNGMRSPXXXXXXXXXXXXXNAREHHGVIMEAFRGVW 247
FAV+K+S +P++DFRESMVEM+ N +R+ N +E+H +I++ F VW
Sbjct: 245 FAVIKSSIDPSKDFRESMVEMIAENNIRTSNDMEDLLVCYLTLNPKEYHDLIIKVFVQVW 304
Query: 248 VEIV 251
+E++
Sbjct: 305 LEVI 308
>AT5G58360.1 | chr5:23590079-23590969 REVERSE LENGTH=297
Length = 296
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 188 FAVVKASAEPARDFRESMVEMVVGNGMRSPXXXXXXXXXXXXXNAREHHGVIMEAFRGVW 247
FA+V +S +P +DFRESMVEM++ N MR N+ E+H VI++AF W
Sbjct: 226 FAIVLSSVDPEKDFRESMVEMIMENKMREQKDLEDLLACYLSLNSSEYHDVIIKAFENTW 285
Query: 248 VEIV 251
+ +
Sbjct: 286 LHLT 289
>AT2G30400.1 | chr2:12956592-12957554 FORWARD LENGTH=321
Length = 320
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 188 FAVVKASAEPARDFRESMVEMVVGNGMRSPXXXXXXXXXXXXXNAREHHGVIMEAFRGVW 247
FAV+K S +P +DFRESM+EM+ N +R+ N +E+H +I+ F +W
Sbjct: 254 FAVMKRSVDPKKDFRESMIEMIEENNIRASKDLEDLLACYLTLNPKEYHDLIIHVFEQIW 313
Query: 248 VEIV 251
+++
Sbjct: 314 LQLT 317
>AT5G01840.1 | chr5:324552-325364 FORWARD LENGTH=271
Length = 270
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 190 VVKASAEPARDFRESMVEMVVGNGMRSPXXXXXXXXXXXXXNAREHHGVIMEAFRGVWVE 249
VVKAS +P RDF+ESM EM+ N +R+ N+ E+H +I+ F+ +W++
Sbjct: 202 VVKASVDPKRDFKESMEEMIAENKIRATKDLEELLACYLCLNSDEYHAIIINVFKQIWLD 261
Query: 250 I 250
+
Sbjct: 262 L 262
>AT5G19650.1 | chr5:6639632-6640297 REVERSE LENGTH=222
Length = 221
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 188 FAVVKASAEPARDFRESMVEMVVGNGMRSPXXXXXXXXXXXXXNAREHHGVIMEAFRGVW 247
FAVVK S +P DFR SMVEM+V + +P N+R+HH VI++ F ++
Sbjct: 156 FAVVKKSKDPYEDFRTSMVEMIVERQIFAPAELQQLLQCFLSLNSRQHHKVIVQVFLEIY 215
Query: 248 VEIVA 252
+ +
Sbjct: 216 ATLFS 220
>AT4G18830.1 | chr4:10337449-10338498 FORWARD LENGTH=350
Length = 349
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 188 FAVVKASAEPARDFRESMVEMVVGNGMRSPXXXXXXXXXXXXXNAREHHGVIMEAFRGV 246
FAVVK S++P +DFR+SM+EM++ NG+ P N E+H +I+ F+ V
Sbjct: 284 FAVVKCSSDPQKDFRDSMIEMIMENGINHPEELKELLVCYLRLNTDEYHDMIISVFQQV 342
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.133 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,461,966
Number of extensions: 78463
Number of successful extensions: 140
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 6
Length of query: 260
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 163
Effective length of database: 8,447,217
Effective search space: 1376896371
Effective search space used: 1376896371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)