BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0316100 Os05g0316100|AK066887
(577 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G08650.2 | chr3:2624694-2627308 REVERSE LENGTH=620 593 e-170
>AT3G08650.2 | chr3:2624694-2627308 REVERSE LENGTH=620
Length = 619
Score = 593 bits (1530), Expect = e-170, Method: Compositional matrix adjust.
Identities = 323/540 (59%), Positives = 378/540 (70%), Gaps = 2/540 (0%)
Query: 39 DRKLEGAG-GQDGFKSGKVPVSTVAWSXXXXXXXXXXXXXPFFFLELEAQWAGLCNGLAA 97
++ L G G+ KV VSTVA PFFF+EL+ QWAG+CNG+AA
Sbjct: 79 EKTLHDIGMGEKRGTHNKVSVSTVALFTLAMAAATGLGAVPFFFVELDPQWAGICNGMAA 138
Query: 98 GVMLAASFDLVQEGQMYGSGSWVVFGILSGGFFIWLCKKFLEQYGEVSMLDIKGADASKV 157
GVMLAASFDLV+EGQ +GSG+WVV GIL+G FIWLCK+ LEQYGEVSMLDIKGADA+KV
Sbjct: 139 GVMLAASFDLVKEGQEHGSGNWVVTGILAGALFIWLCKQILEQYGEVSMLDIKGADATKV 198
Query: 158 ILVVGIMTLHXXXXXXXXXXXXXXXXXXXQGLLVTIAIAVHNIPEGLAVSMLLSSRGVSP 217
+LV+GIMTLH QGLLVT+AIAVHNIPEGLAVSM+L+SRGVSP
Sbjct: 199 VLVIGIMTLHSFGEGSGVGVSFAGSKGFSQGLLVTLAIAVHNIPEGLAVSMVLASRGVSP 258
Query: 218 QKAMIWSIITSLPQPIVAVPAFLCADAFQKVLPFCTGFAAGCMIWIVIAEVLPDAFKEAA 277
Q AM+WSIITSLPQP+VAVPAFLCADAF K LPFCTGFAAGCMIW+VIAEVLPDAFKEA+
Sbjct: 259 QNAMLWSIITSLPQPLVAVPAFLCADAFSKFLPFCTGFAAGCMIWMVIAEVLPDAFKEAS 318
Query: 278 PSQVASAGTLAVAFMETLGTVLQGFTDGHNSEDTAGFLVSLVFGLGPLFGGIVLVAFSLT 337
PSQVASA T++VA ME L T+ + FT +NSED +GF VSL+FGLGPL GG+ LVA ++T
Sbjct: 319 PSQVASAATISVASMEALSTLFESFTHDYNSEDASGFFVSLLFGLGPLLGGVFLVASAVT 378
Query: 338 FSMPHPLLTGVASGIAFRLAAWRPLQLLMSSKMGXXXXXXXXXXXXXXYHVATSNILQLV 397
F + H LL GVASGIAF L WRPLQLL+S+KMG H +S IL +
Sbjct: 379 FRLQHALLMGVASGIAFVLGLWRPLQLLLSAKMGLIPLVSLLAIGAGLSHFTSSTILNVT 438
Query: 398 NRKKSSV-NVITXXXXXXXXXXXXXXXXACGSVFLHAYAEGLQLGVAARKAYGLGRYMVL 456
RKKS ++I ACG+V HA AEGL LGVAA AYGLGR+MVL
Sbjct: 439 GRKKSRAGSLINPVTNFPTSVITLQSLLACGAVGFHALAEGLALGVAAPNAYGLGRHMVL 498
Query: 457 PVSLHGLPRGAAVASCIYGXXXXXXXXXXXXXXXXXXXXXXXISAILAKIDYSGLDYWMV 516
PVSLHGLPRG AVASC++G I +ILA IDYSGLD+ MV
Sbjct: 499 PVSLHGLPRGTAVASCVFGATDSWHAALAAAALIGFVGPISAIGSILAGIDYSGLDHVMV 558
Query: 517 IACGALIPSFGRVFKRSLRLDMRKSICGLLIGFAFASVCLMSTRFICLHTPYCNSAPEAV 576
+ACG L+PSF +V KR++RL+ RK G+++G A A VCL TR +CLHTPYCNSAPEAV
Sbjct: 559 VACGGLLPSFWQVIKRAVRLERRKGSVGMVLGLACAVVCLTFTRLVCLHTPYCNSAPEAV 618
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.139 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,375,293
Number of extensions: 320468
Number of successful extensions: 857
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 853
Number of HSP's successfully gapped: 2
Length of query: 577
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 473
Effective length of database: 8,255,305
Effective search space: 3904759265
Effective search space used: 3904759265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)