BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0311500 Os05g0311500|AK058638
(215 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38640.1 | chr2:16157725-16158474 REVERSE LENGTH=197 121 3e-28
AT5G41590.1 | chr5:16632221-16633896 REVERSE LENGTH=222 103 5e-23
AT1G80120.1 | chr1:30139198-30139986 FORWARD LENGTH=211 93 1e-19
AT3G15810.1 | chr3:5348054-5349178 REVERSE LENGTH=221 83 1e-16
AT3G14260.1 | chr3:4747986-4748779 REVERSE LENGTH=231 78 4e-15
AT1G53900.1 | chr1:20127634-20130834 FORWARD LENGTH=581 77 8e-15
AT1G53880.1 | chr1:20115069-20118269 FORWARD LENGTH=581 77 8e-15
AT1G53870.1 | chr1:20112295-20113057 FORWARD LENGTH=218 75 3e-14
AT1G53890.3 | chr1:20124896-20125995 FORWARD LENGTH=232 64 7e-11
AT1G63410.1 | chr1:23510075-23511997 REVERSE LENGTH=209 61 3e-10
>AT2G38640.1 | chr2:16157725-16158474 REVERSE LENGTH=197
Length = 196
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 104/220 (47%), Gaps = 30/220 (13%)
Query: 1 MTKVHPNXXXXXXXXXXXXXXXXXSLTVWRRSLLFNGKGFTVFDGKGNLVFRVESYAGGS 60
MTKVHP LTVW++SLLFN GFTV++ G LVFRV++Y
Sbjct: 1 MTKVHPKFPSTCEESLCDSKAAVV-LTVWKKSLLFNCDGFTVYNANGELVFRVDNYMNCP 59
Query: 61 PREVVLMDADGRALLTIRRKKLSFADEWLIYXXXXXXXXXXXXKRFTARRHVSLRPTKXX 120
+VLMDA G LL+IRRKKLS D W++Y FTAR++VS+ +
Sbjct: 60 RDNIVLMDASGFPLLSIRRKKLSLGDCWMVYDGETERDPI-----FTARKNVSIISNRKS 114
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXCRYDVEGSYAARCLDVFASASAGEQRRRVAAVCSK 180
Y++EGSY R + +++ A + K
Sbjct: 115 LAWVSAKKTVL----------------YEIEGSYGQRSCKIL---DERRNKKKTAEIKRK 155
Query: 181 EAAV-----GPDVFRLVVEPGFEPALAMAVVILLDQMHAS 215
E + G DV++L+VE EP +AMA+ I+LDQM S
Sbjct: 156 ETVIGGVAFGKDVYKLIVESEMEPRVAMALTIILDQMFRS 195
>AT5G41590.1 | chr5:16632221-16633896 REVERSE LENGTH=222
Length = 221
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 98/194 (50%), Gaps = 14/194 (7%)
Query: 25 SLTVWRRSLLFNGKGFTVFDGKGNLVFRVESYAGGSPREVVLMDADGRALLTIRR-KKLS 83
+LTVWR+SLL + +GFTV D G+L++RV++YA P E++LMD DG +LL + R KK++
Sbjct: 38 TLTVWRKSLLVSCEGFTVIDSNGDLIYRVDNYARTRPEELILMDKDGNSLLLMHRTKKIT 97
Query: 84 FADEWLIYXXXXXXXXXXXXKRFTARRHVSLRPTKXXXXXXXXXXXXXXXXXXXXXXXXX 143
D W IY K T +L+
Sbjct: 98 LVDSWGIYEANDTKGETKIPKCPTWYMRKNLK--------MNILSTKSDILAYVYSGSFD 149
Query: 144 XXCRYDVEGSY---AARCLDVFASASAGEQRRRVAAVCSKEAAVGPDVFRLVVEPGFEPA 200
Y ++GSY + + + V + + E +R+ V +K G DVF LVV PGF+
Sbjct: 150 KKNSYIIKGSYRCKSCKIVHVPLNKTVVEIKRK--EVRTKGVRFGSDVFDLVVNPGFDTG 207
Query: 201 LAMAVVILLDQMHA 214
LAMA+V+LLDQM +
Sbjct: 208 LAMALVLLLDQMFS 221
>AT1G80120.1 | chr1:30139198-30139986 FORWARD LENGTH=211
Length = 210
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 95/199 (47%), Gaps = 31/199 (15%)
Query: 25 SLTVWRRSLLFNGKGFTVFDGKGNLVFRVESYAGGSPR---EVVLMDADGRALLTIRRKK 81
SLTV + SL F G GFTV+D KG+LVFRV+SY G + R EVVLMDA GR LLT+RRK+
Sbjct: 18 SLTVRKTSLFFAGDGFTVYDCKGSLVFRVDSYGGPNTRDTDEVVLMDAHGRCLLTLRRKR 77
Query: 82 LSFADEWLIYXXXXXXXXXXXXKRFTARRHVSLRPTKXXXXXXXXXXXXXXXXXXXXXXX 141
S W Y F RR +
Sbjct: 78 PSLRRRWEGYLGERSDGQKPI---FGVRRSSIIGRNSVTVEVYGDYQCS----------- 123
Query: 142 XXXXCRYDVEGSYAARCLDVFASASAGEQRRRVAAV-----CSKEAAVGPDVFRLVVEPG 196
Y +EGS+ AR V + E RR+VA + S +G DVF L V+PG
Sbjct: 124 -----EYLIEGSFGARNCTVVEA----ETRRKVAEIRRKVDASTNVMLGKDVFSLNVKPG 174
Query: 197 FEPALAMAVVILLDQMHAS 215
F+ A AM +V++LDQ++
Sbjct: 175 FDGAFAMGLVLVLDQIYGD 193
>AT3G15810.1 | chr3:5348054-5349178 REVERSE LENGTH=221
Length = 220
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 26/194 (13%)
Query: 26 LTVWRRSLLFNGKGFTVFDGKGNLVFRVESYAGGS--PREVVLMDADGRALLTIRRKKLS 83
LTV + SL + G GF +D +G+++FRV+SY + E+VLMDA G+ LLT++RK+ +
Sbjct: 33 LTVCKTSLFYTGDGFAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDATGKCLLTVKRKRPT 92
Query: 84 FADEWLIYXXXXXXXXXXXXKRFTARRHVSLRPTKXXXXXXXXXXXXXXXXXXXXXXXXX 143
W + F R +P
Sbjct: 93 LHQRW---------------EGFLGERSEGQKPIFSVRRSSIIGRCTMEVEVYDGTGE-- 135
Query: 144 XXCRYDVEGSYAARCLDVFAS--ASAGEQRRRVAAVCSKEAAVGPDVFRLVVEPGFEPAL 201
Y ++G ++ R ++ + + E +R+V A S +G DVF L ++PGF+ A
Sbjct: 136 ---EYIIDGDFSQRSCLIYDTKKCTVAEIKRKVDA--STNVMLGRDVFTLEIKPGFDGAF 190
Query: 202 AMAVVILLDQMHAS 215
AM +V++LDQ++
Sbjct: 191 AMGLVVVLDQINGD 204
>AT3G14260.1 | chr3:4747986-4748779 REVERSE LENGTH=231
Length = 230
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 1 MTKVHPNXXXXXXXXXXXX---XXXXXSLTVWRRSLLFNGKGFTVFDGKGNLVFRVESYA 57
M K+HP+ S T+W +SL+FN G TVFD KGN+++RV++Y
Sbjct: 23 MVKIHPDLTTSGAGEETSSPYLTTEQESFTIWMKSLVFNTNGCTVFDSKGNIIYRVDNYN 82
Query: 58 GGSPREVVLMDADGRALLTIRRKKLSFADEWLIY 91
S REV LMD G L T+RR+K W Y
Sbjct: 83 SKSCREVYLMDLSGHVLFTLRRQKFGLFKTWEGY 116
>AT1G53900.1 | chr1:20127634-20130834 FORWARD LENGTH=581
Length = 580
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 8/92 (8%)
Query: 25 SLTVWRRSLLFNGKGFTVFDGKGNLVFRVESYAGGSPREVVLMDADGRALLTIRRKKLSF 84
S T+W RSL+F+ KG TVFD KGNL++RV++Y S EV LMD G+ L T+R+KKL
Sbjct: 31 SFTIWMRSLVFHSKGCTVFDSKGNLIYRVDNYNSKSCSEVYLMDLYGKILFTLRQKKLGL 90
Query: 85 ADEWLIYXXXXXXXXXXXXKRFTARRHVSLRP 116
W Y RF R++ + P
Sbjct: 91 FKSWKGYNSTGT--------RFQLRKNFKILP 114
>AT1G53880.1 | chr1:20115069-20118269 FORWARD LENGTH=581
Length = 580
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 8/92 (8%)
Query: 25 SLTVWRRSLLFNGKGFTVFDGKGNLVFRVESYAGGSPREVVLMDADGRALLTIRRKKLSF 84
S T+W RSL+F+ KG TVFD KGNL++RV++Y S EV LMD G+ L T+R+KKL
Sbjct: 31 SFTIWMRSLVFHSKGCTVFDSKGNLIYRVDNYNSKSCSEVYLMDLYGKILFTLRQKKLGL 90
Query: 85 ADEWLIYXXXXXXXXXXXXKRFTARRHVSLRP 116
W Y RF R++ + P
Sbjct: 91 FKSWKGYNSTGT--------RFQLRKNFKILP 114
>AT1G53870.1 | chr1:20112295-20113057 FORWARD LENGTH=218
Length = 217
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 83/192 (43%), Gaps = 37/192 (19%)
Query: 26 LTVWRRSLLFNGKGFTVFDGKGNLVFRVESYAGGS-PREVVLMDADGRALLTIRRKKLSF 84
T+W +SL+FN KG TVFD KGNL++RV++Y S EV MD +G+ L T+R+KKL F
Sbjct: 44 FTIWMKSLVFNSKGCTVFDSKGNLIYRVDNYDSKSWSNEVYFMDLNGKILFTLRQKKLGF 103
Query: 85 ADEWLIYXXXXXXXXXXXXKRFTARRHVSLRPTKXXXXXXXXXXXXXXXXXXXXXXXXXX 144
W Y RF R+ + P +
Sbjct: 104 FKSWEGYNSTGT--------RFRLRKIFKILPRESSSSYKVVMGSRI------------- 142
Query: 145 XCRYDVEGSYAARCLDVFASASAGEQR----RRVAAVCSKEAAV-----GPDVFRLVVEP 195
V+G + C + S + R +A V +K + + G DV ++VEP
Sbjct: 143 -----VDGDQQS-CYKIVNRGSVFAIKDGSGRLMAEVKNKLSDISGLDLGDDVLTMMVEP 196
Query: 196 GFEPALAMAVVI 207
+ +L M +VI
Sbjct: 197 QLDHSLIMGIVI 208
>AT1G53890.3 | chr1:20124896-20125995 FORWARD LENGTH=232
Length = 231
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 26 LTVWRRSLLFNGKGFTVFDGKGNLVFRVESYAGGS-PREVVLMDADGRALLTIR 78
T+W +SL+FN KG TVFD KGNL++RV++Y S EV MD +G+ L T+R
Sbjct: 32 FTIWMKSLVFNSKGCTVFDSKGNLIYRVDNYDSKSWSNEVYFMDLNGKILFTLR 85
>AT1G63410.1 | chr1:23510075-23511997 REVERSE LENGTH=209
Length = 208
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 25 SLTVWRRSLLFNGKGFTVFDGKGNLVFRVESYAGGSPREVVLMDADGRALLTIRRKKLSF 84
+ TVW +SL++ G TV++ G + +RVE+Y S EV +MD G L TIR+KKL
Sbjct: 21 TFTVWMKSLVYQTNGLTVYNSNGEITYRVENYDKCS-NEVHIMDLHGNILFTIRKKKLWL 79
Query: 85 ADEWLIY 91
W +Y
Sbjct: 80 FGSWYVY 86
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,309,434
Number of extensions: 103057
Number of successful extensions: 253
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 13
Length of query: 215
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 121
Effective length of database: 8,529,465
Effective search space: 1032065265
Effective search space used: 1032065265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)