BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0307400 Os05g0307400|AK072444
(437 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G09700.1 | chr1:3137960-3140118 REVERSE LENGTH=420 213 2e-55
AT3G08850.1 | chr3:2686978-2694911 REVERSE LENGTH=1345 146 3e-35
AT5G01770.1 | chr5:294539-301773 REVERSE LENGTH=1337 125 6e-29
AT3G26932.1 | chr3:9930460-9931714 REVERSE LENGTH=360 103 2e-22
AT5G41070.1 | chr5:16438547-16439916 FORWARD LENGTH=394 100 2e-21
AT2G28380.1 | chr2:12134098-12135915 REVERSE LENGTH=435 98 9e-21
AT3G62800.1 | chr3:23225749-23227163 REVERSE LENGTH=356 90 2e-18
>AT1G09700.1 | chr1:3137960-3140118 REVERSE LENGTH=420
Length = 419
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/181 (62%), Positives = 131/181 (72%), Gaps = 4/181 (2%)
Query: 30 VENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKA 89
V NCYVFKSRLQEYAQK L TP Y KEGPSH+ +F+STV+++ Y SLPGF NRKA
Sbjct: 10 VSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKA 69
Query: 90 AEQSAAEVALMEIVKSIPANANIPA-VQETGLCKNLLQEYAQKMNYAIPSYICTK--PAS 146
AEQSAAEVAL E+ KS + + V ETGLCKNLLQEYAQKMNYAIP Y C K
Sbjct: 70 AEQSAAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLG 129
Query: 147 GLAPFLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGS-ANGATKYIVVPGK 205
+ F CTVEIGGI+Y GAA RTKKDAEI A RTALLAIQ ++ + AN T+ V+P +
Sbjct: 130 RVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKNNLANYNTQLTVLPCE 189
Query: 206 R 206
+
Sbjct: 190 K 190
>AT3G08850.1 | chr3:2686978-2694911 REVERSE LENGTH=1345
Length = 1344
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 65/79 (82%), Positives = 72/79 (91%)
Query: 359 EEAMKTGCVALVLCLNISVDPPDVIKISPCVRKECWIDPFSMAAPKALETIGKTLHSQYE 418
+E MKTGCVALVLCLNI+VDPPDVIKISPC R E WIDPFSMA PKALETIGK L +QYE
Sbjct: 101 KERMKTGCVALVLCLNITVDPPDVIKISPCARIEAWIDPFSMAPPKALETIGKNLSTQYE 160
Query: 419 RWQPKARYKLQLDPTLEEV 437
RWQP+ARYK+QLDPT++EV
Sbjct: 161 RWQPRARYKVQLDPTVDEV 179
>AT5G01770.1 | chr5:294539-301773 REVERSE LENGTH=1337
Length = 1336
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 67/80 (83%), Gaps = 1/80 (1%)
Query: 359 EEAMKTGCVALVLCLNISVDPPDVIKISPCVRKECWIDPFSMAAP-KALETIGKTLHSQY 417
+E MKTGCVALV+CL+I+VDPPDVIKISPC R ECWIDPFSM P +ALE IG+ L QY
Sbjct: 91 KERMKTGCVALVMCLHITVDPPDVIKISPCARLECWIDPFSMFPPRRALEAIGQNLSIQY 150
Query: 418 ERWQPKARYKLQLDPTLEEV 437
ERW +ARYK++LDPT ++V
Sbjct: 151 ERWLARARYKVELDPTKDDV 170
>AT3G26932.1 | chr3:9930460-9931714 REVERSE LENGTH=360
Length = 359
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 87/154 (56%), Gaps = 2/154 (1%)
Query: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
++K++LQE AQ++ P Y ++EGP H P FK++V N + S S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 95 AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FL 152
AEVAL + P+ + V ETG+ KNLLQE A + +P Y + G P F
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 153 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 186
CTVE+ G+ + G +A+TKK AE AA A +++
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLR 154
>AT5G41070.1 | chr5:16438547-16439916 FORWARD LENGTH=394
Length = 393
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 88/157 (56%), Gaps = 2/157 (1%)
Query: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
++K++LQE AQ++ P Y +EGP H P FK++V N + S S + AE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 95 AEVALMEIVKSIPANA-NIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FL 152
AEV+L + +P+ + + ETG+ KNLLQE A + +P Y + S P F
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 153 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQS 189
CTVE+ G+ + G +A+TKK AE AA A +++ S
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKMS 157
>AT2G28380.1 | chr2:12134098-12135915 REVERSE LENGTH=435
Length = 434
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Query: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
++K++LQE AQ++ P Y +EGP H P FK+TV N + S S + AE SA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 95 AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FL 152
AEVAL + P+++ + ETG+ KNLLQE AQ++ +P Y + G P F
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 153 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 186
TVE+ GI + G A+ KK AE AA A +++
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLK 154
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
V+K+ LQE AQ+ G P Y T + G H+PVF TV + ++ P N+K AE++A
Sbjct: 87 VYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFTGTVELAGITFTGDPA-KNKKQAEKNA 145
Query: 95 AEVA---LMEIVK----SIPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKPASG 147
A A L ++ K S+P NI +++ + + L+ NY I I T +S
Sbjct: 146 AMAAWSSLKQLAKETSSSMPEPENIDELEQVIIARALI-------NYRIKENIGTGSSSS 198
>AT3G62800.1 | chr3:23225749-23227163 REVERSE LENGTH=356
Length = 355
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 15/188 (7%)
Query: 34 YVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQS 93
+V+K +LQ YA + L+ P Y +EGP H P F+ V ++ S F K+AE +
Sbjct: 3 HVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHA 62
Query: 94 AAEVALMEIVKSIPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FL 152
AA++A+ + P ++ KNLLQE AQK + +P Y AP F
Sbjct: 63 AAKIAVASLTPQSPEGIDV-------AYKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115
Query: 153 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGKR---VGK 209
TVE G + G A+TKK AE+ AA+ A ++I+ G++N T +P +R V
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKN---GNSN-QTGSPTLPSERQEDVNS 171
Query: 210 EVEKRPIE 217
V+ P E
Sbjct: 172 NVKSSPQE 179
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.128 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,048,955
Number of extensions: 362650
Number of successful extensions: 1021
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1004
Number of HSP's successfully gapped: 8
Length of query: 437
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 335
Effective length of database: 8,310,137
Effective search space: 2783895895
Effective search space used: 2783895895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 113 (48.1 bits)