BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0301600 Os05g0301600|AK073928
         (165 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52200.2  | chr5:21202818-21204017 REVERSE LENGTH=212          117   2e-27

>AT5G52200.2 | chr5:21202818-21204017 REVERSE LENGTH=212
          Length = 211

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 91/154 (59%), Gaps = 9/154 (5%)

Query: 5   RVKWNEDNLYEIESNKPVRQKITEPKTPYHPMVDDDGSLSP-TRPFDKCLDETVNAEAIL 63
           RV+W+E N+ EIESNKPVRQKITEPKTPYHPM+DDDGSLSP  R FD+C+D+   AE + 
Sbjct: 28  RVQWDEANIVEIESNKPVRQKITEPKTPYHPMMDDDGSLSPRGRAFDECVDDMQRAEELR 87

Query: 64  TALNGVASSSKTXXXXXXXXXXXXXXXXXXXXXXXXXEKSRLS-------FKEHRRAHYD 116
             LN  A+SS                           +    S       F  HR+AHYD
Sbjct: 88  NVLNDAAASSSRNSSQGSGGGGWSSSDEEEEEADPMDQDEEGSGSGKNERFNAHRKAHYD 147

Query: 117 EFLKVKELMRSGSLIDDEADEDDRGAKGSQAKAV 150
           EF KVKEL  SGS  ++E +EDD GAKGS+++  
Sbjct: 148 EFRKVKELRSSGSFYEEEEEEDD-GAKGSKSETT 180



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.309    0.127    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,444,719
Number of extensions: 123666
Number of successful extensions: 303
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 2
Length of query: 165
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 74
Effective length of database: 8,611,713
Effective search space: 637266762
Effective search space used: 637266762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 108 (46.2 bits)