BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0299200 Os05g0299200|Os05g0299200
         (463 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43235.1  | chr2:17968910-17970822 REVERSE LENGTH=438          229   2e-60

>AT2G43235.1 | chr2:17968910-17970822 REVERSE LENGTH=438
          Length = 437

 Score =  229 bits (584), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 129/266 (48%), Positives = 167/266 (62%), Gaps = 17/266 (6%)

Query: 184 DRSLGGKXXXXXXXXXXXXXXXXXXXXXXXEVKRREPKAR---------LPEWWP-ELRE 233
           DRSLGGK                       +  R     R         LP+WWP  L  
Sbjct: 170 DRSLGGKEVVVSVDNIRSSSRDSKSFIASDQASRSNSTPRNLHLKAQNNLPKWWPTSLTS 229

Query: 234 EV--VVDQGPGMEKWARLANRLVRAIIDNRITGKDYKYDDAIQLRQLCKISGVKVSFDTE 291
           +   VVD+    E + R ANR+VRAI+DNR +GKD   DD IQLR++C+ISGV+V+F+ +
Sbjct: 230 QSFDVVDK----EDYQREANRIVRAIVDNRTSGKDITDDDIIQLRRVCRISGVQVTFEPK 285

Query: 292 NARDSFYRAAINFVLDDCSRAAQDIGAAQISGENPRNFLAGLASNIGLDKFRAATLVCAS 351
           N  DSFYR +I+FVL+ CSRA  +  + +I  E+ R F+AGLA NIGL K  AA +V A+
Sbjct: 286 NTGDSFYRTSIDFVLNACSRAPWESSSVEICSEDAREFIAGLAENIGLAKIDAARMVSAA 345

Query: 352 VAARTRSLFLQCWALEMQGKRSEALDELSKICRIHNMFPPEENSAEMEMVAGGLKKNLQV 411
           VAARTRS FLQ WALE+QGK SE++ ELSKIC IH +FPP E SAEMEMVA GL+K +++
Sbjct: 346 VAARTRSWFLQAWALEIQGKHSESVAELSKICLIHRIFPPNEYSAEMEMVARGLEKLMKL 405

Query: 412 AERVHLLSLYRSICTAGNI-RTAAEA 436
            ER  LL  +  +C + +  R+AAEA
Sbjct: 406 EERQSLLKTFVGMCCSEDSQRSAAEA 431



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,243,275
Number of extensions: 199003
Number of successful extensions: 430
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 361
Effective length of database: 8,310,137
Effective search space: 2999959457
Effective search space used: 2999959457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)