BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0268400 Os05g0268400|Os05g0268400
(334 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13750.1 | chr5:4438318-4441289 FORWARD LENGTH=479 225 2e-59
AT5G13740.1 | chr5:4432689-4436483 FORWARD LENGTH=487 204 5e-53
AT3G43790.3 | chr3:15655443-15658848 FORWARD LENGTH=485 198 3e-51
AT5G13940.1 | chr5:4490263-4495585 REVERSE LENGTH=810 54 1e-07
>AT5G13750.1 | chr5:4438318-4441289 FORWARD LENGTH=479
Length = 478
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/286 (44%), Positives = 161/286 (56%), Gaps = 58/286 (20%)
Query: 13 LSSLGRFC-FQIRDMNIAKREEDIGFYAGFVAASYFLARTFSSVPWGIFADKYGRKPCIV 71
+SSL F F I D NIAK+EEDIGFYAGFV S+ L R F+SV WG+ AD+YGRKP I+
Sbjct: 52 ISSLFPFLYFMIDDFNIAKKEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVIL 111
Query: 72 ISILSVIFFNTLFGLSTRYWMAIVTRGMLGMLCGILGPIKAYATEICRKEHQALGMSLVT 131
I SV+ FNTLFGLS +WMAI+TR LG G+LGPIKAYA EI R E+Q L +S V+
Sbjct: 112 IGTASVVVFNTLFGLSLNFWMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVS 171
Query: 132 SSRAVAFVLGPAIGGFLAQ----------------------------------------- 150
++ + ++GPAIGGFLAQ
Sbjct: 172 TAWGIGLIIGPAIGGFLAQPAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRI 231
Query: 151 -ETLHLH--NDGKVGGAGEDAQISEEVEAQADLSNIESGKAKVSSDTSLKNLLKNWKFVS 207
ETLH H ND E +A DLS+ + KV+ +LL NW +S
Sbjct: 232 PETLHNHKFND------------DESYDALKDLSD-DPESNKVAERNGKSSLLNNWPLIS 278
Query: 208 SVIIYCTFSLHDVAYLETFSFWAVSKRKFRGLNLTSQDLATVSAIS 253
S+I+YC FSLHD+AY E FS WA S RK+ GL ++ D+ +V A S
Sbjct: 279 SIIVYCVFSLHDMAYTEIFSLWANSPRKYGGLGYSTADVGSVLAFS 324
>AT5G13740.1 | chr5:4432689-4436483 FORWARD LENGTH=487
Length = 486
Score = 204 bits (519), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 161/284 (56%), Gaps = 47/284 (16%)
Query: 13 LSSLGRFCF-QIRDMNIAKREEDIGFYAGFVAASYFLARTFSSVPWGIFADKYGRKPCIV 71
+SSL F + I D +AK E+DIGFYAGFV S+ L R +SV WGI AD+YGRKP I+
Sbjct: 53 ISSLYPFLYYMIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIIL 112
Query: 72 ISILSVIFFNTLFGLSTRYWMAIVTRGMLGMLCGILGPIKAYATEICRKEHQALGMSLVT 131
+ +S+ FN LFGLS+ +WMAI TR +LG +LG +KAYA+EI R E+QA MS V+
Sbjct: 113 LGTISIAIFNALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVS 172
Query: 132 SSRAVAFVLGPAIGGFLAQ----------------------------------------- 150
++ + ++GPA+GGFLAQ
Sbjct: 173 TAWGIGLIIGPALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFI 232
Query: 151 -ETLHLHNDGKVGGAGEDAQISEEVEAQADLSNIESGKAKVSSDTSLKNLLKNWKFVSSV 209
ETLH H K+ D + +EA + S+ +GKA + + ++LLKNW +SS+
Sbjct: 233 PETLHNH---KLDSLSHDDSY-DILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSI 288
Query: 210 IIYCTFSLHDVAYLETFSFWAVSKRKFRGLNLTSQDLATVSAIS 253
I+YC LHD AY E F+ WA S RK+ GL+ ++ ++ TV AIS
Sbjct: 289 IVYCVLCLHDTAYSEIFALWANSPRKYGGLSYSTNEVGTVLAIS 332
>AT3G43790.3 | chr3:15655443-15658848 FORWARD LENGTH=485
Length = 484
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/283 (39%), Positives = 159/283 (56%), Gaps = 33/283 (11%)
Query: 4 AELPTMLQLLSSLGRFCFQIRDMNIAKREEDIGFYAGFVAASYFLARTFSSVPWGIFADK 63
L T L + S F IRD +IAK+EEDIGFYAGFV +S+ + R +S+ WG AD+
Sbjct: 43 VSLCTALPISSLFPYIYFMIRDFHIAKQEEDIGFYAGFVGSSFMIGRALTSIFWGKLADR 102
Query: 64 YGRKPCIVISILSVIFFNTLFGLSTRYWMAIVTRGMLGMLCGILGPIKAYATEICRKEHQ 123
YGRKP I+I SVI FNTLFGLST +W+AI R +LG +LG I+AYA+E+ +E+
Sbjct: 103 YGRKPIILIGTFSVIIFNTLFGLSTSFWLAISVRFLLGCFNCLLGVIRAYASEVVSEEYN 162
Query: 124 ALGMSLVTSSRAVAFVLGPAIGGFLAQETLHLHND-------GKVGGAGEDAQIS----- 171
AL +S+V++SR + +LGPAIGG+LAQ N G+ IS
Sbjct: 163 ALSLSVVSTSRGIGLILGPAIGGYLAQPAEKYPNIFSQSSVFGRFPYFLPSLVISVYATA 222
Query: 172 ---------EEVEAQADLSNIESGKAKVSSDTSL------------KNLLKNWKFVSSVI 210
E + + ++ +++ D S +LL+N ++ +I
Sbjct: 223 VLIACWWLPETLHTRCRIAQGRLNPTELNDDESRGGGLDEQKIINKPSLLRNRPLMAIII 282
Query: 211 IYCTFSLHDVAYLETFSFWAVSKRKFRGLNLTSQDLATVSAIS 253
+YC FSL ++AY E FS WAVS R + GL+ +SQD+ V AIS
Sbjct: 283 VYCVFSLQEIAYNEIFSLWAVSDRSYGGLSFSSQDVGEVLAIS 325
>AT5G13940.1 | chr5:4490263-4495585 REVERSE LENGTH=810
Length = 809
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 195 SLKNLLKNWKFVSSVIIYCTFSLHDVAYLETFSFWAVSKRKFRGLNL 241
S++ LL NW +SS+I+YC LH+ AY E F+ WA S R++ GL +
Sbjct: 155 SMRFLLGNWPLMSSIIVYCILCLHETAYSEIFALWANSPRRYGGLGI 201
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,790,571
Number of extensions: 265141
Number of successful extensions: 724
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 724
Number of HSP's successfully gapped: 7
Length of query: 334
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 235
Effective length of database: 8,392,385
Effective search space: 1972210475
Effective search space used: 1972210475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)