BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0255600 Os05g0255600|AK073067
(230 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G66410.1 | chr5:26519909-26521459 FORWARD LENGTH=231 285 1e-77
AT3G50960.1 | chr3:18938891-18940226 REVERSE LENGTH=231 278 1e-75
AT3G25580.1 | chr3:9292557-9294148 FORWARD LENGTH=211 123 8e-29
AT2G18990.1 | chr2:8238851-8239932 REVERSE LENGTH=212 122 1e-28
>AT5G66410.1 | chr5:26519909-26521459 FORWARD LENGTH=231
Length = 230
Score = 285 bits (730), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 141/230 (61%), Positives = 160/230 (69%)
Query: 1 MDPDAVKSTLSNLAFGNVMAAAARDYQKEIVAKEKAQAASASHXXXXXXXXXXXXXXXXX 60
MDPD VKSTLSNLAFGNV+AAAARDY+KE++A EKAQ + +
Sbjct: 1 MDPDTVKSTLSNLAFGNVLAAAARDYKKEVLANEKAQGSRPVNEEVDLDELMDDPELEKL 60
Query: 61 HAERIXXXXXXXXXXXXXXXQGHGEYREITEGDFLGEVTGSEKVICHFYHREFYRCKIMD 120
HA+RI QGHGEYRE++EGDFLGEVT SEKVICHFYH+EFYRCKIMD
Sbjct: 61 HADRIAALRREVEKREAFKRQGHGEYREVSEGDFLGEVTRSEKVICHFYHKEFYRCKIMD 120
Query: 121 KHLKALAPIYLGTKFIKLDAENAPFFVTKLGIKTLPCVILFKKGIAADRLIGFQDLGSKD 180
KHLK LAP ++ TKFIK+DAENAPFFVTKL IKTLPCVILF KGIA DRL+GFQDLG+KD
Sbjct: 121 KHLKTLAPRHVDTKFIKMDAENAPFFVTKLAIKTLPCVILFSKGIAMDRLVGFQDLGAKD 180
Query: 181 DFSTRALENILKMKGIIXXXXXXXXXXXXXTYMSMNRRVRSSTAQDSDSD 230
DFST LEN+L KG++ S+ R VRSS DSDSD
Sbjct: 181 DFSTTKLENLLVKKGMLSEKRKEEDEEDYEYQESIRRSVRSSANVDSDSD 230
>AT3G50960.1 | chr3:18938891-18940226 REVERSE LENGTH=231
Length = 230
Score = 278 bits (712), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 140/230 (60%), Positives = 162/230 (70%)
Query: 1 MDPDAVKSTLSNLAFGNVMAAAARDYQKEIVAKEKAQAASASHXXXXXXXXXXXXXXXXX 60
MDPDAVKSTLSNLAFGNVMAAAAR+YQKE++A EKAQ ++ +
Sbjct: 1 MDPDAVKSTLSNLAFGNVMAAAARNYQKEVLANEKAQGSNPVNEEVDLDELMDDPELERL 60
Query: 61 HAERIXXXXXXXXXXXXXXXQGHGEYREITEGDFLGEVTGSEKVICHFYHREFYRCKIMD 120
HA+RI QGHGEYRE++EGDFLGEVT SEKVICHFYH+EFYRCKIMD
Sbjct: 61 HADRIAALKREVEKRESFKRQGHGEYREVSEGDFLGEVTRSEKVICHFYHKEFYRCKIMD 120
Query: 121 KHLKALAPIYLGTKFIKLDAENAPFFVTKLGIKTLPCVILFKKGIAADRLIGFQDLGSKD 180
KHLK LAP ++ TKFIK+DAENAPFFVTKL IKTLPCV+LF KG+A DRL+GFQDLG+KD
Sbjct: 121 KHLKTLAPRHVDTKFIKVDAENAPFFVTKLAIKTLPCVVLFSKGVAMDRLVGFQDLGTKD 180
Query: 181 DFSTRALENILKMKGIIXXXXXXXXXXXXXTYMSMNRRVRSSTAQDSDSD 230
DF+T LEN+L KG++ S+ R VRSS DSDSD
Sbjct: 181 DFTTNKLENVLLKKGMLSKKKKEEDDEDAEYQESIRRSVRSSENLDSDSD 230
>AT3G25580.1 | chr3:9292557-9294148 FORWARD LENGTH=211
Length = 210
Score = 123 bits (308), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 82 GHGEYREI-TEGDFLGEVTGSEKVICHFYHREFYRCKIMDKHLKALAPIYLGTKFIKLDA 140
GHGEY EI +E DF V SE+V+CHFY RE + CK+MDKH+ LA ++ T+F+K+ A
Sbjct: 64 GHGEYSEIHSEKDFFSVVKSSERVVCHFY-RENWPCKVMDKHMSILAKQHIETRFVKIQA 122
Query: 141 ENAPFFVTKLGIKTLPCVILFKKGIAADRLIGFQDLGSKDDFSTRALENILKMKGIIXXX 200
E +PF +L I LP + L K D ++GF +LG KDDFST LE + +I
Sbjct: 123 EKSPFLAERLKIVVLPTLALIKNTKVDDYVVGFNELGGKDDFSTEDLEERIARAQVIHYE 182
Query: 201 XXXXXXXXXXTYMSMNRRVRSSTAQDSDSD 230
T + R VR S DSDS+
Sbjct: 183 GESSLKQKSTT--QVRRNVRQSARSDSDSE 210
>AT2G18990.1 | chr2:8238851-8239932 REVERSE LENGTH=212
Length = 211
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 82 GHGEYREI-TEGDFLGEVTGSEKVICHFYHREFYRCKIMDKHLKALAPIYLGTKFIKLDA 140
GHGEY EI +E DF V SE+V+CHFY RE + CK+MDKH+ LA ++ T+F+K+ A
Sbjct: 64 GHGEYSEIHSEKDFFSVVKASERVVCHFY-RENWPCKVMDKHMSILAKQHIETRFVKIQA 122
Query: 141 ENAPFFVTKLGIKTLPCVILFKKGIAADRLIGFQDLGSKDDFSTRALENILKMKGIIXXX 200
E +PF +L I LP + L K D ++GF +LG KDDFST LE + +I
Sbjct: 123 EKSPFLAERLKIVVLPTLALIKNTKVDDYVVGFNELGGKDDFSTEDLEERIARAQVIHYD 182
Query: 201 XXXXXXXXXXTYMSMNRRVRSSTAQDSDSD 230
T + R VR S DSDS+
Sbjct: 183 GESSSLKPKST-TQVRRNVRQSARSDSDSE 211
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,472,534
Number of extensions: 111296
Number of successful extensions: 243
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 4
Length of query: 230
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 135
Effective length of database: 8,502,049
Effective search space: 1147776615
Effective search space used: 1147776615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)