BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0251500 Os05g0251500|AK058649
         (70 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20165.3  | chr5:6805870-6806730 REVERSE LENGTH=92              81   1e-16

>AT5G20165.3 | chr5:6805870-6806730 REVERSE LENGTH=92
          Length = 91

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 50/82 (60%), Gaps = 24/82 (29%)

Query: 1  MSALFNFNSFLTVVLLVICTCTYIKIQFPAILNDRTG----------------------- 37
          MSALFNF+SFLTVVLLVICTCTY+K+QFPAIL  +TG                       
Sbjct: 1  MSALFNFHSFLTVVLLVICTCTYLKMQFPAILEQKTGIVFCQIKDALSDFSAYCYFRLQM 60

Query: 38 FRGFFWKAARIGER-LSPWVAL 58
          FRGFFWKAARI    L P V L
Sbjct: 61 FRGFFWKAARIDSNALKPMVDL 82



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.338    0.147    0.496 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,398,287
Number of extensions: 41877
Number of successful extensions: 137
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 70
Length of database: 11,106,569
Length adjustment: 42
Effective length of query: 28
Effective length of database: 9,955,097
Effective search space: 278742716
Effective search space used: 278742716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 104 (44.7 bits)