BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0212400 Os05g0212400|AK072108
(280 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G46420.1 | chr2:19054891-19056830 FORWARD LENGTH=364 299 1e-81
AT3G61700.2 | chr3:22836414-22838803 FORWARD LENGTH=365 276 1e-74
AT5G04090.2 | chr5:1105672-1107629 REVERSE LENGTH=306 114 8e-26
AT3G10250.1 | chr3:3168371-3170418 REVERSE LENGTH=325 104 6e-23
>AT2G46420.1 | chr2:19054891-19056830 FORWARD LENGTH=364
Length = 363
Score = 299 bits (765), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 165/296 (55%), Positives = 204/296 (68%), Gaps = 16/296 (5%)
Query: 1 MNRGEVVRTLSTRARIEPGFTTLVWQKLEEENSEFFRAYYIRLKLKKQINLFNHLLEHQY 60
M+R EVV+TL TRARI+PGFTTLVWQKLEEEN+EFFRAYYIRLKLKKQI +FNHLLEHQY
Sbjct: 67 MSRDEVVKTLLTRARIDPGFTTLVWQKLEEENAEFFRAYYIRLKLKKQIVVFNHLLEHQY 126
Query: 61 HLMKYXXXXXXXXXXXXNGIRPMP-VNNLPMGYPVLQQPGIPAPVQPHVNSISCGPPGCH 119
HL KY NGI PM VNN+PMGYPVLQ P + A PH++ +SCG CH
Sbjct: 127 HLTKYNVHSKVPLVPMQNGIHPMASVNNMPMGYPVLQHPQMHAQGHPHLDPMSCGMSSCH 186
Query: 120 VVNGIPAPGGYNPIRMSSGNGM----TENEVPGTAHAGAMSSEMAVSPSSAMSSNHVSFT 175
VVNG+PAP + P+R++SGN M T E + S+M VSP+S SS H F
Sbjct: 187 VVNGVPAPANFQPMRINSGNDMVIDTTMAEPTPMIPPNSGMSDMPVSPASVASSGHFPFA 246
Query: 176 P-DISGMDVDASTVNATFGDDLGNGGPLQIGPNGGDSSS------LGQQIWDFSLSDLSA 228
D+SGM +D S +++ F D+G LQ+G +GG +S Q W+FSLSDL+A
Sbjct: 247 ASDMSGMGMDTSALDSAFTSDVGTSVGLQLGSDGGAGNSRDPLRPFDQIPWNFSLSDLTA 306
Query: 229 DLTNLGDLAALENYSGNPFLPSDSDI-FESPD-DDIVEYFADAINGP--SQSDEEK 280
DL+NLGDL AL NY G+PFLPSDS+I +SP+ +DI E+F D+I GP SQS+E+K
Sbjct: 307 DLSNLGDLGALGNYPGSPFLPSDSEILLDSPEQEDIDEFFVDSIPGPPCSQSEEDK 362
>AT3G61700.2 | chr3:22836414-22838803 FORWARD LENGTH=365
Length = 364
Score = 276 bits (705), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 162/298 (54%), Positives = 199/298 (66%), Gaps = 22/298 (7%)
Query: 1 MNRGEVVRTLSTRARIEPGFTTLVWQKLEEENSEFFRAYYIRLKLKKQINLFNHLLEHQY 60
MNR EVV+TL TRARI+PGFTTLVWQKLEEEN++FFRAYYIRLKLKKQI LFNHLLEHQY
Sbjct: 70 MNRDEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRAYYIRLKLKKQIILFNHLLEHQY 129
Query: 61 HLMKYXX-XXXXXXXXXXNGIRPMPVNNLPMGYPVLQQPGIPAPVQPHVNSISCGPPGCH 119
HLMKY NG+ PM N+PMGYPVLQ P + P PH + + G CH
Sbjct: 130 HLMKYPPGPPKVPLAPIQNGMHPMAPVNMPMGYPVLQHPQMHVPGHPH-HLDAMGVSSCH 188
Query: 120 VVNGIPAPGGYNPIRMSSGNGMTENEVPGTA-------HAGAMSSEMAVSPSSAMSSNHV 172
VVNG+PAP ++P+RM++ N M + A ++GAM EM SP+S SS H
Sbjct: 189 VVNGVPAPANFHPLRMNTANDMVIDTTANDATPQVIPPNSGAM-PEMVASPASVASSGHF 247
Query: 173 SFTP-DISGMDVDASTVNATFGDDLGNGGPLQIGPNGGDS-SSLGQQIWDFSLSDLSADL 230
F D+SGM +D S +++ F D+G G + N DS S Q W+FSLSDL+ADL
Sbjct: 248 PFAASDMSGMVMDTSVLDSAFTSDVGPDG--EGAGNSRDSLRSFDQIPWNFSLSDLTADL 305
Query: 231 TNLG-----DLAALENYSGNPFLPSDSDIF-ESPD-DDIVEYFADAINGP-SQSDEEK 280
+NLG DL AL NY G+PFLPSDS+IF +SP+ +DI E+F D++ GP S SDEEK
Sbjct: 306 SNLGDMYVADLGALGNYPGSPFLPSDSEIFLDSPEQEDIEEFFVDSVPGPRSNSDEEK 363
>AT5G04090.2 | chr5:1105672-1107629 REVERSE LENGTH=306
Length = 305
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 134/270 (49%), Gaps = 39/270 (14%)
Query: 1 MNRGEVVRTLSTRARIEPGFTTLVWQKLEEENSEFFRAYYIRLKLKKQINLFNHLLEHQY 60
MN+ EVV TL +A+IEPGFT LVWQKLEEEN EFF+AYY+RL +K QI +N LLE Q
Sbjct: 29 MNQKEVVDTLLEQAKIEPGFTELVWQKLEEENREFFKAYYLRLMVKHQIMEYNELLEQQI 88
Query: 61 HLMKYXXXXXXXXXXXXNGIRPMPVNNLPMGY----PVLQQPGIPAPVQPHVNSISCGPP 116
+ M+ NG P+N + Y P P + +P ++I+ P
Sbjct: 89 NHMRQMHPTAGASVRNRNGSHVPPMNQQQLLYERKEPDQSSPNLSSPYLNGGSAINTNIP 148
Query: 117 -----GCHVVNGIPAPGGYNPIRMSSGNGMTENEVPGTAHAGAMSSEMAVSPSSAMSSNH 171
H P+P N + + + N +P G + SE A +
Sbjct: 149 SYVDFSSHSRRVDPSP---NSLSLQATN------MP--LMQGMIKSETA----------Y 187
Query: 172 VSFTPDISGMDVDASTVN---ATFGDDLGNGG---PLQIGPNGGDSSSLGQQIWDFSLSD 225
+ P + G + ++ + A+F +D N PL + P+ SLGQ +FSLSD
Sbjct: 188 QNCAPYMYGGEAQSTVGDVTIASFSNDSSNQSLNDPL-VDPDAPTFGSLGQIPQNFSLSD 246
Query: 226 LSADLTNLGDLAALENYSGNPFLPSDSDIF 255
L+AD + D+ LE+Y G+PFL +D++ F
Sbjct: 247 LTADFSQSSDI--LESYEGSPFLLADAENF 274
>AT3G10250.1 | chr3:3168371-3170418 REVERSE LENGTH=325
Length = 324
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 131/297 (44%), Gaps = 65/297 (21%)
Query: 1 MNRGEVVRTLSTRARIEPGFTTLVWQKLEEENSEFFRAYYIRLKLKKQINLFNHLLEHQY 60
MN+ EVV TL +A+IEPGFT LVWQKLEEEN EFF+AYY+RL +K QI FN LLE Q
Sbjct: 29 MNQKEVVDTLLEQAKIEPGFTELVWQKLEEENREFFKAYYLRLMVKHQIMEFNKLLEQQV 88
Query: 61 HLMKYXXXXXXXXXXXXNGIRPMPVNNLPMGYPVLQQPGIPAPVQPHVNSISCGPPGCHV 120
H M+ NG +N + YP H
Sbjct: 89 HHMRQMHPTGVASVQNTNGSHLQSMNQKQLCYP-----------------------SEHT 125
Query: 121 VNGIPAPGGYNPIRMS------SGNGMTENEVPGTAHAGAMSSEMAVSPSSAMSSNHVSF 174
+ + ++P+ S +G+ VP + + + + SP+ M S+ +
Sbjct: 126 DQSLKSESAHHPMASSLSNAFLNGSSTLNTNVPSSINISTHARRVDASPN--MLSSQTTN 183
Query: 175 TPDISGMD------VDASTVNATF---GDDLGNGGPLQIG----PNGGDSSS-------- 213
P + GM+ A T A+F G+ G +G PN + S+
Sbjct: 184 MPMMQGMNGGMIKSETAFTNPASFMYGGERNALEGHSAVGDTSIPNFSNESNNQPLSDPL 243
Query: 214 ----------LGQQIWDFSLSDLSADLTNLGDLAALENYSGNPFL-PSDSDIFESPD 259
LGQ +FSLSDL+AD + ++ LE+Y +PFL P+ + +S D
Sbjct: 244 LEAEASTFGFLGQIPRNFSLSDLTADFSQSSEI--LESYDRSPFLVPNAENFLDSRD 298
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,619,296
Number of extensions: 307036
Number of successful extensions: 657
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 4
Length of query: 280
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 183
Effective length of database: 8,447,217
Effective search space: 1545840711
Effective search space used: 1545840711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)