BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0196800 Os05g0196800|AY858584
         (538 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G19450.1  | chr2:8426436-8429455 FORWARD LENGTH=521            609   e-174

>AT2G19450.1 | chr2:8426436-8429455 FORWARD LENGTH=521
          Length = 520

 Score =  609 bits (1571), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 281/419 (67%), Positives = 340/419 (81%), Gaps = 8/419 (1%)

Query: 115 FTFRAAAPVHRKAKESPLSSDAIFKQSHAGLFNLCIVVLVAVNSRLIIENLMKYGLLIRA 174
           FT+R + P HR+A+ESPLSSDAIFKQSHAGLFNLC+VVL+AVNSRLIIENLMKYG LIR 
Sbjct: 105 FTYRPSVPAHRRARESPLSSDAIFKQSHAGLFNLCVVVLIAVNSRLIIENLMKYGWLIRT 164

Query: 175 GFWFNDKSLRDWPLLMCCLSLPAFPLGAFAVEKLAFNNVITDAVATCLHIFLSTTEIVYP 234
            FWF+ +SLRDWPL MCC+SL  FPL AF VEKL     I++ V   LHI ++ TE++YP
Sbjct: 165 DFWFSSRSLRDWPLFMCCISLSIFPLAAFTVEKLVLQKYISEPVVIFLHIIITMTEVLYP 224

Query: 235 VLVILKCDSAVLSGFLLIFIACIVWLKLVSFAHTNHDIRQLTMGGKKVDNELSTVDMDNL 294
           V V L+CDSA LSG  L+ + CIVWLKLVS+AHT++DIR L     K + E+S       
Sbjct: 225 VYVTLRCDSAFLSGVTLMLLTCIVWLKLVSYAHTSYDIRSLANAADKANPEVSYY----- 279

Query: 295 QPPTLGNLIYFMMAPTLCYQPSYPRTSCVRKGWLIRQIILYLIFTGLQGFIIEQYINPIV 354
              +L +L YFM+APTLCYQPSYPR++C+RKGW+ RQ    +IFTG  GFIIEQYINPIV
Sbjct: 280 --VSLKSLAYFMVAPTLCYQPSYPRSACIRKGWVARQFAKLVIFTGFMGFIIEQYINPIV 337

Query: 355 VNSQHPLKGGLLNAVETVLKLSLPNVYLWLCMFYAFFHLWLSILAEILRFGDREFYKDWW 414
            NS+HPLKG LL A+E VLKLS+PN+Y+WLCMFY FFHLWL+ILAE+L FGDREFYKDWW
Sbjct: 338 RNSKHPLKGDLLYAIERVLKLSVPNLYVWLCMFYCFFHLWLNILAELLCFGDREFYKDWW 397

Query: 415 NAKTIDEYWRKWNMPVHKWVVRHIYFPCMRNGISKEVAVLISFLVSAVLHEICVAVPCRI 474
           NAK++ +YWR WNMPVHKW+VRHIYFPC+R+ I K +A++I+FLVSAV HE+C+AVPCR+
Sbjct: 398 NAKSVGDYWRMWNMPVHKWMVRHIYFPCLRSKIPKTLAIIIAFLVSAVFHELCIAVPCRL 457

Query: 475 LKFWAFLGIMLQIPLIVLTAYLKSKFRDTMVGNMIFWFFFCIYGQPMCLLLYYHDVMNR 533
            K WAFLGIM Q+PL+ +T YL+ +F  T VGNMIFWF FCI+GQPMC+LLYYHD+MNR
Sbjct: 458 FKLWAFLGIMFQVPLVFITNYLQERFGST-VGNMIFWFIFCIFGQPMCVLLYYHDLMNR 515



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.332    0.144    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,442,008
Number of extensions: 386425
Number of successful extensions: 938
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 936
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 435
Effective length of database: 8,282,721
Effective search space: 3602983635
Effective search space used: 3602983635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 114 (48.5 bits)