BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0187600 Os05g0187600|Os05g0187600
(340 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02740.1 | chr3:590561-593089 FORWARD LENGTH=489 103 1e-22
AT1G05840.1 | chr1:1762843-1766150 REVERSE LENGTH=486 101 7e-22
AT1G65240.1 | chr1:24230963-24233349 REVERSE LENGTH=476 86 2e-17
AT5G36260.1 | chr5:14285068-14288179 REVERSE LENGTH=483 84 8e-17
AT1G08210.1 | chr1:2577119-2580581 REVERSE LENGTH=493 76 3e-14
AT5G22850.1 | chr5:7633717-7636298 REVERSE LENGTH=494 74 1e-13
AT2G36670.1 | chr2:15364949-15368016 REVERSE LENGTH=513 70 2e-12
>AT3G02740.1 | chr3:590561-593089 FORWARD LENGTH=489
Length = 488
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 81/141 (57%), Gaps = 9/141 (6%)
Query: 89 VDGVMGLGPSNTSLVYQLAKSQKWKKMFAHCLDGKRSGGIFVLGHIVGPKVRKTPLDQTS 148
VDG+MG G SN+S + QLA K K+ FAHCLD GGIF +G +V PKV+ TP+ S
Sbjct: 222 VDGIMGFGQSNSSFISQLASQGKVKRSFAHCLDNNNGGGIFAIGEVVSPKVKTTPMLSKS 281
Query: 149 SRYRTTLLEITVGETSLSLSAGNVEIKSQNMTILETGSLISYLPEKIFSDL--------E 200
+ Y L I VG + L LS+ + I+++G+ + YLP+ +++ L
Sbjct: 282 AHYSVNLNAIEVGNSVLELSSNAFDSGDDKGVIIDSGTTLVYLPDAVYNPLLNEILASHP 341
Query: 201 DISVINIG-GYSCFHYERRMN 220
++++ + ++CFHY +++
Sbjct: 342 ELTLHTVQESFTCFHYTDKLD 362
>AT1G05840.1 | chr1:1762843-1766150 REVERSE LENGTH=486
Length = 485
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 9/141 (6%)
Query: 89 VDGVMGLGPSNTSLVYQLAKSQKWKKMFAHCLDGKRSGGIFVLGHIVGPKVRKTPLDQTS 148
+DG++G G +N+S++ QLA S + KK+FAHCLDG+ GGIF +G +V PKV TPL
Sbjct: 221 LDGILGFGKANSSMISQLASSGRVKKIFAHCLDGRNGGGIFAIGRVVQPKVNMTPLVPNQ 280
Query: 149 SRYRTTLLEITVGETSLSLSAGNVEIKSQNMTILETGSLISYLPEKIFSDL-------ED 201
Y + + VG+ L++ A + + I+++G+ ++YLPE I+ L E
Sbjct: 281 PHYNVNMTAVQVGQEFLTIPADLFQPGDRKGAIIDSGTTLAYLPEIIYEPLVKKITSQEP 340
Query: 202 ISVINI--GGYSCFHYERRMN 220
++I Y CF Y R++
Sbjct: 341 ALKVHIVDKDYKCFQYSGRVD 361
>AT1G65240.1 | chr1:24230963-24233349 REVERSE LENGTH=476
Length = 475
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 89 VDGVMGLGPSNTSLVYQLAKSQKWKKMFAHCLDGKRSGGIFVLGHIVGPKVRKTPLDQTS 148
VDGVMG G SNTS++ QLA + K++F+HCLD + GGIF +G + PKV+ TP+
Sbjct: 212 VDGVMGFGQSNTSVLSQLAATGDAKRVFSHCLDNVKGGGIFAVGVVDSPKVKTTPMVPNQ 271
Query: 149 SRYRTTLLEITVGETSLSLSAGNVEIKSQNMTILETGSLISYLPEKIFSDL 199
Y L+ + V TSL L I TI+++G+ ++Y P+ ++ L
Sbjct: 272 MHYNVMLMGMDVDGTSLDLPR---SIVRNGGTIVDSGTTLAYFPKVLYDSL 319
>AT5G36260.1 | chr5:14285068-14288179 REVERSE LENGTH=483
Length = 482
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 61/111 (54%)
Query: 89 VDGVMGLGPSNTSLVYQLAKSQKWKKMFAHCLDGKRSGGIFVLGHIVGPKVRKTPLDQTS 148
VDG+MG G SNTS++ QLA K++F+HCLD GGIF +G + P V+ TP+
Sbjct: 216 VDGIMGFGQSNTSIISQLAAGGSTKRIFSHCLDNMNGGGIFAVGEVESPVVKTTPIVPNQ 275
Query: 149 SRYRTTLLEITVGETSLSLSAGNVEIKSQNMTILETGSLISYLPEKIFSDL 199
Y L + V + L TI+++G+ ++YLP+ +++ L
Sbjct: 276 VHYNVILKGMDVDGDPIDLPPSLASTNGDGGTIIDSGTTLAYLPQNLYNSL 326
>AT1G08210.1 | chr1:2577119-2580581 REVERSE LENGTH=493
Length = 492
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 2/147 (1%)
Query: 89 VDGVMGLGPSNTSLVYQLAKSQKWKKMFAHCLDGKRSGG-IFVLGHIVGPKVRKTPLDQT 147
VDG+ GLG + S++ QLA ++F+HCL G +SGG I VLG I P TPL +
Sbjct: 223 VDGIFGLGQGSLSVISQLAVQGLAPRVFSHCLKGDKSGGGIMVLGQIKRPDTVYTPLVPS 282
Query: 148 SSRYRTTLLEITVGETSLSLSAGNVEIKSQNMTILETGSLISYLPEKIFSDLEDISVINI 207
Y L I V L + I + + TI++TG+ ++YLP++ +S +
Sbjct: 283 QPHYNVNLQSIAVNGQILPIDPSVFTIATGDGTIIDTGTTLAYLPDEAYSPFIQAVANAV 342
Query: 208 GGYS-CFHYERRMNSDVKWDDEDVWSH 233
Y YE ++ D DV+
Sbjct: 343 SQYGRPITYESYQCFEITAGDVDVFPQ 369
>AT5G22850.1 | chr5:7633717-7636298 REVERSE LENGTH=494
Length = 493
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 89 VDGVMGLGPSNTSLVYQLAKSQKWKKMFAHCLDGKRSGG-IFVLGHIVGPKVRKTPLDQT 147
VDG+ G G S++ QLA ++F+HCL G+ GG I VLG IV P + TPL +
Sbjct: 222 VDGIFGFGQQGMSVISQLASQGIAPRVFSHCLKGENGGGGILVLGEIVEPNMVFTPLVPS 281
Query: 148 SSRYRTTLLEITVGETSLSLSAGNVEIKSQNMTILETGSLISYLPEKIF 196
Y LL I+V +L ++ + TI++TG+ ++YL E +
Sbjct: 282 QPHYNVNLLSISVNGQALPINPSVFSTSNGQGTIIDTGTTLAYLSEAAY 330
>AT2G36670.1 | chr2:15364949-15368016 REVERSE LENGTH=513
Length = 512
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 89 VDGVMGLGPSNTSLVYQLAKSQKWKKMFAHCLDGKRSGG-IFVLGHIVGPKVRKTPLDQT 147
VDG+ G G S+V QL+ +F+HCL G SGG +FVLG I+ P + +PL +
Sbjct: 245 VDGIFGFGKGKLSVVSQLSSRGITPPVFSHCLKGDGSGGGVFVLGEILVPGMVYSPLVPS 304
Query: 148 SSRYRTTLLEITVGETSLSLSAGNVEIKSQNMTILETGSLISYLPEKIF 196
Y LL I V L L A E + TI++TG+ ++YL ++ +
Sbjct: 305 QPHYNLNLLSIGVNGQMLPLDAAVFEASNTRGTIVDTGTTLTYLVKEAY 353
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,828,471
Number of extensions: 207873
Number of successful extensions: 511
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 516
Number of HSP's successfully gapped: 7
Length of query: 340
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 241
Effective length of database: 8,392,385
Effective search space: 2022564785
Effective search space used: 2022564785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)