BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0185600 Os05g0185600|J075122G08
         (172 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11700.2  | chr5:3762961-3771123 REVERSE LENGTH=1477           117   3e-27
AT4G32920.1  | chr4:15888153-15896006 REVERSE LENGTH=1433         112   1e-25
AT5G47020.1  | chr5:19082005-19089800 FORWARD LENGTH=1422          93   7e-20

>AT5G11700.2 | chr5:3762961-3771123 REVERSE LENGTH=1477
          Length = 1476

 Score =  117 bits (292), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/110 (67%), Positives = 81/110 (73%), Gaps = 2/110 (1%)

Query: 63   QDLVGLVISILLLADFSLVLLTFLQLYSYSMIDXXXXXXXXXXXXXAPFPAGINALFSHG 122
            QD+VGLVIS+LLL DFSLVLLT LQLYS S++D              PFPAGINALFSHG
Sbjct: 1317 QDMVGLVISMLLLGDFSLVLLTLLQLYSISLLDVLLALFILPLGLLLPFPAGINALFSHG 1376

Query: 123  PRRSAGLARVYALWNITSLVNVIVAFACGLVHY--KSSAKRHPSMQPWNL 170
            PRRSAGLARVYALWN  SLVNV VAF CG VHY  +SSA +    QPWN+
Sbjct: 1377 PRRSAGLARVYALWNFMSLVNVFVAFLCGYVHYHSESSASKKIPFQPWNI 1426




 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 57/63 (90%)

Query: 1    VAATPDLMLGYLDFFLGGDEKRPDLPPRLHQRLPMSLIFGGDGSYMAPFSLHSDSVVTSL 60
            VAAT DLML YLDFFLGGDEKR DLPPRLHQR PM ++FGGDGSYMAPFSL +D+++TSL
Sbjct: 1064 VAATSDLMLAYLDFFLGGDEKRTDLPPRLHQRFPMPILFGGDGSYMAPFSLQNDNILTSL 1123

Query: 61   ISQ 63
            +SQ
Sbjct: 1124 MSQ 1126



>AT4G32920.1 | chr4:15888153-15896006 REVERSE LENGTH=1433
          Length = 1432

 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/110 (61%), Positives = 80/110 (72%), Gaps = 2/110 (1%)

Query: 63   QDLVGLVISILLLADFSLVLLTFLQLYSYSMIDXXXXXXXXXXXXXAPFPAGINALFSHG 122
            QDLVGLVIS+LLL D +L LLT LQLYS S+++              PFPAG++ALFSHG
Sbjct: 1273 QDLVGLVISVLLLGDLTLTLLTLLQLYSISLLEVFLAMFILPLSIIFPFPAGVSALFSHG 1332

Query: 123  PRRSAGLARVYALWNITSLVNVIVAFACGLVHY--KSSAKRHPSMQPWNL 170
            PRRSA   RVYALWN+TSLVNV+VAF CG VHY   SS K+ P +QPWN+
Sbjct: 1333 PRRSASRTRVYALWNVTSLVNVVVAFVCGYVHYHGSSSGKKIPYLQPWNI 1382




 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 57/63 (90%)

Query: 1    VAATPDLMLGYLDFFLGGDEKRPDLPPRLHQRLPMSLIFGGDGSYMAPFSLHSDSVVTSL 60
            VAATPDLML +LDFFLGGDEKR DLPP++HQRLPM LIFGGDGSYMA +SL SD ++TSL
Sbjct: 1053 VAATPDLMLAHLDFFLGGDEKRSDLPPQVHQRLPMPLIFGGDGSYMAYYSLQSDDILTSL 1112

Query: 61   ISQ 63
            +SQ
Sbjct: 1113 LSQ 1115



>AT5G47020.1 | chr5:19082005-19089800 FORWARD LENGTH=1422
          Length = 1421

 Score = 93.2 bits (230), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 54/65 (83%)

Query: 1    VAATPDLMLGYLDFFLGGDEKRPDLPPRLHQRLPMSLIFGGDGSYMAPFSLHSDSVVTSL 60
            V ATPDLM+ Y+DFFLGGDEKR D+   + +R PM ++FGGDGSYM+P+SLHSD+++T+L
Sbjct: 1036 VGATPDLMVAYIDFFLGGDEKRVDMVSIIQKRFPMCILFGGDGSYMSPYSLHSDTLLTNL 1095

Query: 61   ISQDL 65
            + Q +
Sbjct: 1096 LGQHI 1100




 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 59/107 (55%), Gaps = 3/107 (2%)

Query: 63   QDLVGLVISILLLADFSLVLLTFLQLYSYSMIDXXXXXXXXXXXXXAPFPAGINALFSHG 122
            QD +   ISILLLAD S+ LL  LQ Y  ++                PFPAG+NAL S  
Sbjct: 1263 QDTLLRFISILLLADLSVTLLALLQFYWLALAAFLAILLILPLSLLCPFPAGLNALLSKE 1322

Query: 123  PRRSAGLARVYALWNITSLVNVIVAFACGLVHYKSSAKRHPSMQPWN 169
             RR A L R+Y LWN TSL NVIVAF CG++H        P++  WN
Sbjct: 1323 MRR-ASLTRIYGLWNATSLTNVIVAFICGVIHSGFFTDELPNI--WN 1366



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,390,831
Number of extensions: 116217
Number of successful extensions: 324
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 6
Length of query: 172
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 80
Effective length of database: 8,584,297
Effective search space: 686743760
Effective search space used: 686743760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 108 (46.2 bits)