BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0182700 Os05g0182700|AK065911
(286 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G27000.1 | chr1:9374068-9376422 FORWARD LENGTH=305 225 2e-59
AT2G02730.1 | chr2:765280-767336 REVERSE LENGTH=277 219 1e-57
AT1G04960.2 | chr1:1408021-1410424 REVERSE LENGTH=335 177 4e-45
AT1G24265.3 | chr1:8600613-8603630 FORWARD LENGTH=384 80 1e-15
AT1G24267.2 | chr1:8604451-8607241 REVERSE LENGTH=345 72 2e-13
AT1G44674.1 | chr1:16881891-16882133 FORWARD LENGTH=52 50 2e-06
>AT1G27000.1 | chr1:9374068-9376422 FORWARD LENGTH=305
Length = 304
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 169/241 (70%), Gaps = 4/241 (1%)
Query: 1 MAMVQAGMGLTRVVVLIGAGMAGSVVLRNGRLSEILGELQEILXXXXXXXXXXXXXXADM 60
MAM QAG+GL+R+ +L GAG G+++++NG+LS++LGELQ L +D+
Sbjct: 1 MAM-QAGVGLSRIFLLAGAGYTGTIMMKNGKLSDLLGELQS-LVKGMEKSGEGSEGDSDV 58
Query: 61 TDALTRQVRNLAMEVKQLASSRGSITVLNGGSGQTGVSGLIVPAATVGALGYGYMWWKGI 120
+DA+ QVR LAME++QLAS + ITV+NG SG + L VPAA +GALGYGYMWWKG+
Sbjct: 59 SDAIAAQVRRLAMEIRQLASQQ-HITVMNGVSG-ANLQALAVPAAALGALGYGYMWWKGL 116
Query: 121 SFADLMYVTKRNMANAVSSMTKHLEQVQTSLAAAKRHLTQRIERLDDKLDQQKALSGQIR 180
SF DLMYVTK NMA AV+++TK+LEQV +LAAAKRHLTQRI+ LDDK+++Q LS +I
Sbjct: 117 SFTDLMYVTKANMAAAVANLTKNLEQVSETLAAAKRHLTQRIQNLDDKVEKQIDLSKEIN 176
Query: 181 DDVTDARLKLENIGSEIKNIKQLVWGLDEKMDSMEAKQNFSCAGVMYLCQFIEQNGGKLP 240
V AR + ++ +++++ L+ GLD K+D++E KQ+ + ++ L + KLP
Sbjct: 177 SQVISARENISSLEMDLESLHNLITGLDGKLDTLEYKQDVTNVFMLNLYNYFGGKSTKLP 236
Query: 241 E 241
E
Sbjct: 237 E 237
>AT2G02730.1 | chr2:765280-767336 REVERSE LENGTH=277
Length = 276
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/253 (46%), Positives = 175/253 (69%), Gaps = 9/253 (3%)
Query: 1 MAMVQAGMGLTRVVVLIGAGMAGSVVLRNGRLSEILGELQEILXXXXXXXXXXXXXXADM 60
MAM Q+G+GL+++++L GAG +++++NG++++ILGELQ ++ D
Sbjct: 1 MAM-QSGIGLSKILILAGAGYTSTILVKNGKMADILGELQALVKRFEKSGDHVD----DD 55
Query: 61 TDALTRQVRNLAMEVKQLASSRGSITVLNGGSGQTGVSGLIVPAATVGALGYGYMWWKGI 120
+DA+T Q++ LAMEV+QLASSR ITV+NG G + IVPAAT+GALGYGYMW+KGI
Sbjct: 56 SDAMTTQMQRLAMEVRQLASSR-QITVMNGAQG-ADFTPFIVPAATLGALGYGYMWFKGI 113
Query: 121 SFADLMYVTKRNMANAVSSMTKHLEQVQTSLAAAKRHLTQRIERLDDKLDQQKALSGQIR 180
SF+D+M VTKRNM NAVS++TKHL+ V ++ AK+HL+QR++++DDKLD QK L ++
Sbjct: 114 SFSDIMCVTKRNMENAVSNLTKHLDTVSEAILNAKKHLSQRLQKVDDKLDLQKDLLKGVQ 173
Query: 181 DDVTDARLKLENIGSEIKNIKQLVWGLDEKMDSMEAKQNFSCAGVMYLCQFIEQNGGKLP 240
D+V A L NIG + + + G+ K+DS+E KQN + G++YLC + K+P
Sbjct: 174 DNVGLALEDLANIGDDFDAMHSIFGGMGGKLDSIEYKQNIANMGLIYLCDSLGGENHKMP 233
Query: 241 ERL--EGSKMAGK 251
+ L E +++GK
Sbjct: 234 DILMQEKLRLSGK 246
>AT1G04960.2 | chr1:1408021-1410424 REVERSE LENGTH=335
Length = 334
Score = 177 bits (450), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 142/211 (67%), Gaps = 4/211 (1%)
Query: 20 GMAGSVVLRNGRLSEILGELQEILXXXXXXXXXXXXXXADMTDALTRQVRNLAMEVKQLA 79
G++GS+VLR+GRLS+++ +LQ++L + L Q+R LA E+K+L
Sbjct: 36 GVSGSIVLRHGRLSDLIAQLQDLLNGAQGVESTPFKYDGAL---LAAQIRQLANEIKELT 92
Query: 80 SSRGSITVLNGGSGQTGVSGLIVPAATVGALGYGYMWWKGISFADLMYVTKRNMANAVSS 139
+ +T+ NG S +G + +VPAA VGA+GY YMWWKG SF+D M+VTK+NMA+AV+S
Sbjct: 93 MTN-PVTIFNGDSNSSGYASYLVPAAAVGAMGYCYMWWKGWSFSDAMFVTKKNMADAVAS 151
Query: 140 MTKHLEQVQTSLAAAKRHLTQRIERLDDKLDQQKALSGQIRDDVTDARLKLENIGSEIKN 199
++K L+ + +LA+ ++HL+Q++ LD K+++Q S I DVT+ R + IG + K
Sbjct: 152 VSKQLDDLSDTLASTRKHLSQKLATLDWKVEEQNETSKMILSDVTEMRSSISQIGFDFKQ 211
Query: 200 IKQLVWGLDEKMDSMEAKQNFSCAGVMYLCQ 230
+ +++ G++ K++S+E+KQ+ + +G+ +LCQ
Sbjct: 212 LNEMISGIEGKIESLESKQDVTLSGLWHLCQ 242
>AT1G24265.3 | chr1:8600613-8603630 FORWARD LENGTH=384
Length = 383
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 15/199 (7%)
Query: 62 DALTRQVRNLAMEVKQLASSRGSITVLNGGSGQTGVSGLIVPAATVGALGYGYMWWKGIS 121
D L QV +L E++ L S+R V GSG GLI+ VG +GYGY+WWKG
Sbjct: 95 DVLVAQVNSLRHEIQLLGSNRPITIVSPSGSGGRNY-GLII---IVGVIGYGYVWWKGWK 150
Query: 122 FADLMYVTKRNMANAVSSMTKHLEQVQTSLAAAKRHLTQRIERLDDKLDQQKALSGQIRD 181
D M+ T+R++++A +++ ++ +SL KR L+ I+ + +LD + +
Sbjct: 151 LPDFMFATRRSLSDACNNVGNQIDGFYSSLKGTKRELSSEIDMMGRRLDANTEVIQETIQ 210
Query: 182 DVTDARLKLENIGSEIKNIKQLVWGLDEKMDSMEAKQNFSCAGVMYL---C---QFIEQN 235
+V + I ++K + L K+ +E Q+ + GV L C Q I+++
Sbjct: 211 EVAKLQDGTSFIKDDVKAVFDAFENLASKVCRIEGNQDITLRGVGALHAQCQENQRIQES 270
Query: 236 GGKLP-----ERLEGSKMA 249
LP LE + MA
Sbjct: 271 NKALPSTSSLPALEAAPMA 289
>AT1G24267.2 | chr1:8604451-8607241 REVERSE LENGTH=345
Length = 344
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 10/233 (4%)
Query: 8 MGLTRVVVLIGAGMAGSVVLRNGRLSEIL----GELQEILXXXXXXXXXXXXXXADMTDA 63
+ L ++ +LIGAG+ GSV+ + G L ++ G L+ + D
Sbjct: 3 IPLGKLTILIGAGLVGSVLAKEGSLPDVSSFVSGALKMVFRQLKQEEPAKSASKP-RNDT 61
Query: 64 LTRQVRNLAMEVKQLASSRGSITVLNGGSGQTGVSGLIVPAATVGALGYGYMWWKGISFA 123
L QV +L E+ L+S+R V GSG +G +GYGY+WWKG
Sbjct: 62 LMAQVNSLRHELSLLSSNRPITIVTTAGSGGKKYGY----IIIIGVIGYGYVWWKGWKLP 117
Query: 124 DLMYVTKRNMANAVSSMTKHLEQVQTSLAAAKRHLTQRIERLDDKLDQQKALSGQIRDDV 183
DLM+ T+R++++A +S+ ++ TSL+ K+ L+ +I+ + LD + +V
Sbjct: 118 DLMFATRRSLSDACNSVGSQIDGFYTSLSGTKKELSSKIDGMGRSLDANTEIIQDTGREV 177
Query: 184 TDARLKLENIGSEIKNIKQLVWGLDEKM-DSMEAKQNFSCAGVMYLCQFIEQN 235
+ + ENI ++K + V L K+ +E Q+ + GV L + +N
Sbjct: 178 MELQRGTENIKDDVKFVFDAVENLVRKLIYRIEGNQDITLKGVGALHAQVREN 230
>AT1G44674.1 | chr1:16881891-16882133 FORWARD LENGTH=52
Length = 51
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%)
Query: 133 MANAVSSMTKHLEQVQTSLAAAKRHLTQRIERLDDKLDQQKALSGQIRDDV 183
MA V+++TK+LEQV LAAA RHL Q+I+ +DDK+ +Q L+ +I V
Sbjct: 1 MATVVANLTKNLEQVSKILAAANRHLMQKIQSVDDKVKKQIDLNEEINSQV 51
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.132 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,151,114
Number of extensions: 193800
Number of successful extensions: 747
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 741
Number of HSP's successfully gapped: 6
Length of query: 286
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 188
Effective length of database: 8,419,801
Effective search space: 1582922588
Effective search space used: 1582922588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)