BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0179100 Os05g0179100|J065190K23
(94 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G13395.1 | chr4:7785883-7786050 REVERSE LENGTH=56 59 4e-10
AT3G46613.1 | chr3:17165791-17166225 FORWARD LENGTH=145 50 3e-07
AT5G59510.1 | chr5:23990089-23990523 FORWARD LENGTH=145 48 1e-06
AT3G55515.1 | chr3:20590923-20591162 FORWARD LENGTH=80 47 2e-06
AT3G14362.1 | chr3:4794181-4794327 REVERSE LENGTH=49 47 2e-06
AT1G13245.1 | chr1:4525852-4525977 REVERSE LENGTH=42 47 2e-06
AT2G36985.1 | chr2:15534943-15535104 REVERSE LENGTH=54 47 3e-06
AT1G07490.1 | chr1:2301526-2301849 REVERSE LENGTH=108 46 4e-06
>AT4G13395.1 | chr4:7785883-7786050 REVERSE LENGTH=56
Length = 55
Score = 59.3 bits (142), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/33 (78%), Positives = 29/33 (87%)
Query: 62 RCYAVLKQQRTRLYILRRCVSMLLCWHEHDLSD 94
RC + KQQRTRLYILRRCVSMLLCWH+H +SD
Sbjct: 23 RCLLMAKQQRTRLYILRRCVSMLLCWHDHSISD 55
>AT3G46613.1 | chr3:17165791-17166225 FORWARD LENGTH=145
Length = 144
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 55 KPAELRRRCYAVLKQQRTRLYILRRCVSMLLCWHEHD 91
K A + +C+ V K+ ++R YI++RCV ML+CWH+H
Sbjct: 108 KGASVTGKCFKVAKEHKSRFYIIKRCVLMLVCWHKHS 144
>AT5G59510.1 | chr5:23990089-23990523 FORWARD LENGTH=145
Length = 144
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 27/36 (75%)
Query: 55 KPAELRRRCYAVLKQQRTRLYILRRCVSMLLCWHEH 90
K A + R+C + K+ ++R YI++RCV ML+CWH+H
Sbjct: 105 KGASVTRKCRNMAKEHKSRFYIMKRCVLMLVCWHKH 140
>AT3G55515.1 | chr3:20590923-20591162 FORWARD LENGTH=80
Length = 79
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 61 RRCYAVLKQQRTRLYILRRCVSMLLCWHEHD 91
R+C ++K+QR R YI+RRCV ML+CW +H+
Sbjct: 42 RKCGRLVKEQRARFYIMRRCVVMLICWTDHN 72
>AT3G14362.1 | chr3:4794181-4794327 REVERSE LENGTH=49
Length = 48
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 51 RRMAKPAELRRRCYAVLKQQRTRLYILRRCVSMLLCWHEHD 91
R+ K +C +++K+QR RLYILRRC +ML CW+ H
Sbjct: 6 RKFNKGHAFTSKCVSLVKEQRARLYILRRCATMLCCWYIHG 46
>AT1G13245.1 | chr1:4525852-4525977 REVERSE LENGTH=42
Length = 41
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 23/25 (92%)
Query: 65 AVLKQQRTRLYILRRCVSMLLCWHE 89
AVLK+QR +LYI+RRCV MLLCWH+
Sbjct: 17 AVLKEQRAKLYIIRRCVVMLLCWHD 41
>AT2G36985.1 | chr2:15534943-15535104 REVERSE LENGTH=54
Length = 53
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%), Gaps = 2/36 (5%)
Query: 61 RRCYAVLKQQRTRLYILRRCVSMLLCWHE--HDLSD 94
++C V+K+QR + YILRRC++ML+CWH+ HD D
Sbjct: 17 QKCSHVVKKQRAKFYILRRCIAMLVCWHDQNHDRKD 52
>AT1G07490.1 | chr1:2301526-2301849 REVERSE LENGTH=108
Length = 107
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 65 AVLKQQRTRLYILRRCVSMLLCWHEHD 91
++ K+Q+ R YI+RRCV+ML+CWH+HD
Sbjct: 80 SLAKEQKGRFYIMRRCVAMLVCWHKHD 106
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.137 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,478,868
Number of extensions: 35911
Number of successful extensions: 75
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 11
Length of query: 94
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 30
Effective length of database: 9,351,945
Effective search space: 280558350
Effective search space used: 280558350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 105 (45.1 bits)