BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0164100 Os05g0164100|AK072243
(773 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G07110.1 | chr1:2178363-2183980 REVERSE LENGTH=745 1052 0.0
AT3G30200.1 | chr3:11827752-11834262 REVERSE LENGTH=511 88 2e-17
AT3G50520.1 | chr3:18748058-18749418 FORWARD LENGTH=231 54 3e-07
>AT1G07110.1 | chr1:2178363-2183980 REVERSE LENGTH=745
Length = 744
Score = 1052 bits (2720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/736 (70%), Positives = 595/736 (80%), Gaps = 22/736 (2%)
Query: 47 QLYVSLKMENARITGDLVPHVYGSEPIIGSWDPARALAMERELASMWALSFVVPPDHETL 106
QLYVSLKMEN+++ G+L PHVYGS P+IGSWDP++AL M+RE A M LSFVVPPDHETL
Sbjct: 22 QLYVSLKMENSKVEGELTPHVYGSLPLIGSWDPSKALPMQRESALMSELSFVVPPDHETL 81
Query: 107 DFKFLLKPKDADTPCIIEEGPTRHLTGGMLEGDVRIAWFKMNGDHETLEFRVFNKADIVS 166
DFKFLLKPK+ +TPCI+EEG R LTGG L+GD R+A F++ GD +EFRVF AD VS
Sbjct: 82 DFKFLLKPKNRNTPCIVEEGENRLLTGGSLQGDARLALFRLEGDV-IVEFRVFINADRVS 140
Query: 167 PLDLAASWRVFKENFQPSKVRGIPDVSINVAPAHGTEDTSTESLELDLEHYVIPTPSAAT 226
P+DLA SWR ++EN QPS VRGIPDVSIN P + + ESLELDL HY +P P+ +
Sbjct: 141 PIDLATSWRAYRENLQPSTVRGIPDVSINPDPK--SAECPLESLELDLAHYEVPAPAPSA 198
Query: 227 SEY---AANLAANPASLIQTGALWTNDMLLSDGIQSPSSATADFEDH------NNCNKDN 277
+ Y AA+ A NP SL +G+ + ND +P +A + ED + K+
Sbjct: 199 NSYLVYAADNAENPRSLSASGS-FRND-------STPKAAQRNSEDSGVTVDGSPSAKEM 250
Query: 278 VALPSDSFKKLQVSGIVESKSVDTLTTLQKQDGQKGLFVDRGVGSTKFGKSSSACSLASG 337
+ DS G ESKSV+TL+ Q++DGQKGLFVDRGVGS + KS SA S
Sbjct: 251 TIVVPDSSNIYSAFGEAESKSVETLSPFQQKDGQKGLFVDRGVGSPRLVKSLSASSFL-- 308
Query: 338 LNFGTGKQAMPEXXXXXXXXXXXDRLHGSKEDRKLAIVLVGLPARGKTFTAAKLTRYLRW 397
++ K +MP D++ G KEDR LAIVLVGLPARGKTFTAAKLTRYLRW
Sbjct: 309 IDTKQIKNSMPAAAGAVAAAAVADQMLGPKEDRHLAIVLVGLPARGKTFTAAKLTRYLRW 368
Query: 398 LGHETRHFNVGKYRRLKHGANQSADFFRDDNPEGIEARNEVAALAMEDMIDWMHGGGQVG 457
LGH+T+HFNVGKYRRLKHG N SADFFR DNPEG+EAR EVAALAMEDMI WM GGQVG
Sbjct: 369 LGHDTKHFNVGKYRRLKHGVNMSADFFRADNPEGVEARTEVAALAMEDMIAWMQEGGQVG 428
Query: 458 IFDATNSTRKRRYMLMKMAEGNCKIIFLETICNDPNIIERNVRLKIQQSPDYADQPDYET 517
IFDATNSTR RR MLMKMAEG CKIIFLET+CND IIERN+RLKIQQSPDY+++ D+E
Sbjct: 429 IFDATNSTRVRRNMLMKMAEGKCKIIFLETLCNDERIIERNIRLKIQQSPDYSEEMDFEA 488
Query: 518 GVRDFKERLANYEKVYEPVQEGSYIKMIDMVKGQGGQLQVNNISGYLPGRIVFFLVNSHL 577
GVRDF++RLANYEKVYEPV+EGSYIKMIDMV G GGQ+QVNNISGYLPGRIVFFLVN+HL
Sbjct: 489 GVRDFRDRLANYEKVYEPVEEGSYIKMIDMVSGNGGQIQVNNISGYLPGRIVFFLVNTHL 548
Query: 578 TPRPILLTRHGESLHNVRGRVGGDTVLSEDGELYSKKLANFIEKRLKSEKTASIWTSTLQ 637
TPRPILLTRHGES+ NVRGR+GGD+V+S+ G+LY+KKLA+F+EKRLKSEK ASIWTSTLQ
Sbjct: 549 TPRPILLTRHGESMDNVRGRIGGDSVISDSGKLYAKKLASFVEKRLKSEKAASIWTSTLQ 608
Query: 638 RTILTASPIVGFPKIQWRALDEINSGVCDGMTYEEIKKVMPEEFESRKKDKLRYRYPRGE 697
RT LTAS IVGFPK+QWRALDEIN+GVCDGMTYEE+KK MPEE+ESRKKDKLRYRYPRGE
Sbjct: 609 RTNLTASSIVGFPKVQWRALDEINAGVCDGMTYEEVKKNMPEEYESRKKDKLRYRYPRGE 668
Query: 698 SYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFADRPLREVPDIEMPLHTIIEI 757
SYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFADRPL+E+P IEMPLHTIIEI
Sbjct: 669 SYLDVIQRLEPVIIELERQRAPVVVISHQAVLRALYAYFADRPLKEIPQIEMPLHTIIEI 728
Query: 758 QMGVTGVEEKRYKLMD 773
QMGV+GV+EKRYKLMD
Sbjct: 729 QMGVSGVQEKRYKLMD 744
>AT3G30200.1 | chr3:11827752-11834262 REVERSE LENGTH=511
Length = 510
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 66/108 (61%), Gaps = 14/108 (12%)
Query: 165 VSPLDLAASWRVFKENFQPSKVRGIPDVSINVAPAHGTEDTSTESLELDLEHYVIPTPSA 224
VSP+DLA SWR ++EN QPS VRGIPDVSIN P + + ESLELDL HY +P P+
Sbjct: 50 VSPIDLATSWRAYRENLQPSTVRGIPDVSINPDPK--SVECPLESLELDLAHYEVPAPTP 107
Query: 225 ATSE---YAANLAANPASLIQTGALWTNDMLLSDGIQSPSSATADFED 269
+ + YAA+ A NP SL +G+ ND +P +A + ED
Sbjct: 108 SANSYLVYAADNAENPRSLSASGSF--ND-------STPKAAQRNSED 146
>AT3G50520.1 | chr3:18748058-18749418 FORWARD LENGTH=231
Length = 230
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 20/187 (10%)
Query: 582 ILLTRHGESLHNVRGRVGG--DTVLSEDGELYSKKLANFIEKRLKSEKTASIWTSTLQRT 639
I++ RHGE+ N ++ G D L++ G ++++A E+ K +K + +++S L+R
Sbjct: 16 IVVVRHGETSWNAERKIQGHLDVELNDAGRQQAQRVA---ERLSKEQKISHVYSSDLKRA 72
Query: 640 ILTASPIVG----FPKIQWRALDEINSGVCDGMTYEEIKKVMPEEFESRKKDKLRYRYPR 695
TA I + R L E + G G+ Y+E K+ PE +++ ++ P
Sbjct: 73 FETAQIIAAKCGKLEVLTDRDLRERHLGDMQGLVYQEASKIRPEAYKAFSSNRTDVDIPG 132
Query: 696 GESYLDVIQRLEPVIIELER-----QRAPVVVISHQAVLRALYAYFADRPLREVPDIEMP 750
G LD + + L+R + +VV++H V+R+LY +R +E
Sbjct: 133 GGESLDKL--YDRCTTALQRIGDKHKGERIVVVTHGGVIRSLY----ERARPSARKVEKI 186
Query: 751 LHTIIEI 757
L+T + +
Sbjct: 187 LNTSVNV 193
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 16,682,277
Number of extensions: 722946
Number of successful extensions: 1794
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1787
Number of HSP's successfully gapped: 4
Length of query: 773
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 667
Effective length of database: 8,200,473
Effective search space: 5469715491
Effective search space used: 5469715491
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)