BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0162800 Os05g0162800|J065085C01
(300 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G01060.1 | chr1:33992-37061 REVERSE LENGTH=646 82 3e-16
AT3G09600.1 | chr3:2946459-2948270 FORWARD LENGTH=299 81 8e-16
AT2G46830.1 | chr2:19246005-19248717 FORWARD LENGTH=609 79 2e-15
AT1G01520.1 | chr1:190596-192139 FORWARD LENGTH=288 79 3e-15
AT5G52660.2 | chr5:21359423-21362037 REVERSE LENGTH=332 79 3e-15
AT5G37260.1 | chr5:14751344-14752972 REVERSE LENGTH=288 77 2e-14
AT5G17300.1 | chr5:5690435-5692435 REVERSE LENGTH=388 77 2e-14
AT3G10113.1 | chr3:3118043-3119391 REVERSE LENGTH=337 75 3e-14
AT4G01280.2 | chr4:535288-536854 FORWARD LENGTH=304 75 3e-14
AT1G18330.2 | chr1:6306196-6307718 REVERSE LENGTH=373 75 3e-14
AT5G02840.1 | chr5:648794-651212 FORWARD LENGTH=294 74 1e-13
>AT1G01060.1 | chr1:33992-37061 REVERSE LENGTH=646
Length = 645
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 42/49 (85%)
Query: 4 KARKPYTITRPRERWSAEEHERFLDALILFGRDWKRIEAFVATKTAIQV 52
KARKPYTIT+ RERW+ +EHERFL+AL L+GR W+RIE + TKTA+Q+
Sbjct: 13 KARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQI 61
>AT3G09600.1 | chr3:2946459-2948270 FORWARD LENGTH=299
Length = 298
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 41/50 (82%)
Query: 3 KKARKPYTITRPRERWSAEEHERFLDALILFGRDWKRIEAFVATKTAIQV 52
KK RKPYTIT+ RE W+ EEH++FL+AL LF RDWK+IE FV +KT IQ+
Sbjct: 31 KKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQI 80
>AT2G46830.1 | chr2:19246005-19248717 FORWARD LENGTH=609
Length = 608
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 41/49 (83%)
Query: 4 KARKPYTITRPRERWSAEEHERFLDALILFGRDWKRIEAFVATKTAIQV 52
K RKPYTIT+ RERW+ EEH RF++AL L+GR W++IE VATKTA+Q+
Sbjct: 13 KTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQI 61
>AT1G01520.1 | chr1:190596-192139 FORWARD LENGTH=288
Length = 287
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 42/50 (84%)
Query: 3 KKARKPYTITRPRERWSAEEHERFLDALILFGRDWKRIEAFVATKTAIQV 52
KK RKPYTIT+ RE W+ +EH++FL+AL LF RDWK+I+AFV +KT IQ+
Sbjct: 49 KKVRKPYTITKSRENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQI 98
>AT5G52660.2 | chr5:21359423-21362037 REVERSE LENGTH=332
Length = 331
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 41/50 (82%)
Query: 3 KKARKPYTITRPRERWSAEEHERFLDALILFGRDWKRIEAFVATKTAIQV 52
KK RKPYTIT+ RE W+ EH++FL+AL LF RDWK+IEAF+ +KT IQ+
Sbjct: 60 KKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQI 109
>AT5G37260.1 | chr5:14751344-14752972 REVERSE LENGTH=288
Length = 287
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 40/49 (81%)
Query: 4 KARKPYTITRPRERWSAEEHERFLDALILFGRDWKRIEAFVATKTAIQV 52
K RKPYTIT+ RE+W+ EHE+F++AL L+GR W+RIE V TKTA+Q+
Sbjct: 25 KTRKPYTITKQREKWTEAEHEKFVEALKLYGRAWRRIEEHVGTKTAVQI 73
>AT5G17300.1 | chr5:5690435-5692435 REVERSE LENGTH=388
Length = 387
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 41/49 (83%)
Query: 4 KARKPYTITRPRERWSAEEHERFLDALILFGRDWKRIEAFVATKTAIQV 52
K RKPYTIT+ RERW+ EEH++F++AL L+GR W+RIE V +KTA+Q+
Sbjct: 44 KVRKPYTITKERERWTDEEHKKFVEALKLYGRAWRRIEEHVGSKTAVQI 92
>AT3G10113.1 | chr3:3118043-3119391 REVERSE LENGTH=337
Length = 336
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 41/49 (83%)
Query: 4 KARKPYTITRPRERWSAEEHERFLDALILFGRDWKRIEAFVATKTAIQV 52
K RKPYT+T+ RE+WS EEH+RFL+A+ L+GR W++I+ + TKTA+Q+
Sbjct: 54 KVRKPYTVTKQREKWSEEEHDRFLEAIKLYGRGWRQIQEHIGTKTAVQI 102
>AT4G01280.2 | chr4:535288-536854 FORWARD LENGTH=304
Length = 303
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 40/49 (81%)
Query: 4 KARKPYTITRPRERWSAEEHERFLDALILFGRDWKRIEAFVATKTAIQV 52
K RKPYTI + RE W+ +EH++FL+AL LF RDWK+IEAFV +KT +Q+
Sbjct: 48 KIRKPYTIKKSRENWTDQEHDKFLEALHLFDRDWKKIEAFVGSKTVVQI 96
>AT1G18330.2 | chr1:6306196-6307718 REVERSE LENGTH=373
Length = 372
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 41/49 (83%)
Query: 4 KARKPYTITRPRERWSAEEHERFLDALILFGRDWKRIEAFVATKTAIQV 52
K RKPYT+T+ RE+WS EEH+RFL+A+ L+GR W++I+ + TKTA+Q+
Sbjct: 65 KVRKPYTVTKQREKWSEEEHDRFLEAIKLYGRGWRQIQEHIGTKTAVQI 113
>AT5G02840.1 | chr5:648794-651212 FORWARD LENGTH=294
Length = 293
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 2 KKKARKPYTITRPRERWSAEEHERFLDALILFGRDWKRIEAFVATKTAIQV 52
+KK RK YTIT+ RE W+ EH++FL+AL LF RDWK+IE FV +KT IQ+
Sbjct: 35 EKKVRKAYTITKSRESWTEGEHDKFLEALQLFDRDWKKIEDFVGSKTVIQI 85
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.136 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,321,330
Number of extensions: 173237
Number of successful extensions: 558
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 558
Number of HSP's successfully gapped: 11
Length of query: 300
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 202
Effective length of database: 8,419,801
Effective search space: 1700799802
Effective search space used: 1700799802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 111 (47.4 bits)