BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0160000 Os05g0160000|AK063865
(72 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G48030.1 | chr1:17717432-17719141 REVERSE LENGTH=508 122 4e-29
AT3G17240.1 | chr3:5890278-5892166 REVERSE LENGTH=508 118 6e-28
AT3G16950.2 | chr3:5786508-5790383 REVERSE LENGTH=624 55 1e-08
AT4G16155.1 | chr4:9153570-9157322 REVERSE LENGTH=631 53 4e-08
>AT1G48030.1 | chr1:17717432-17719141 REVERSE LENGTH=508
Length = 507
Score = 122 bits (305), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 65/72 (90%)
Query: 1 GLVKVVAEKETDRILGVHIMAPNAGEIIHEAVLALQYGASSEDIARTCHAHPTVSEALKE 60
GLVK++A+KETD+ILGVHIMAPNAGE+IHEAVLA+ Y ASSEDIAR CHAHPT+SEALKE
Sbjct: 436 GLVKILADKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKE 495
Query: 61 ACLQTYLKAIHI 72
A + TY K IHI
Sbjct: 496 AAMATYDKPIHI 507
>AT3G17240.1 | chr3:5890278-5892166 REVERSE LENGTH=508
Length = 507
Score = 118 bits (296), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 65/72 (90%)
Query: 1 GLVKVVAEKETDRILGVHIMAPNAGEIIHEAVLALQYGASSEDIARTCHAHPTVSEALKE 60
G+VK++A+KETD+ILGVHIM+PNAGE+IHEAVLA+ Y ASSEDIAR CHAHPT+SEA+KE
Sbjct: 436 GMVKILADKETDKILGVHIMSPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAIKE 495
Query: 61 ACLQTYLKAIHI 72
A + TY K IH+
Sbjct: 496 AAMATYDKPIHM 507
>AT3G16950.2 | chr3:5786508-5790383 REVERSE LENGTH=624
Length = 623
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 1 GLVKVVAEKETDRILGVHIMAPNAGEIIHEAVLALQYGASSEDIARTCHAHPTVSEALKE 60
G+ K++ + ILGVHI +A ++IHEA A+ G +DI HAHPT+SE L E
Sbjct: 489 GIAKMIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKLAVHAHPTLSEVLDE 548
>AT4G16155.1 | chr4:9153570-9157322 REVERSE LENGTH=631
Length = 630
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 1 GLVKVVAEKETDRILGVHIMAPNAGEIIHEAVLALQYGASSEDIARTCHAHPTVSEALKE 60
GL K++ + ILGVHI +A ++IHEA A+ G +DI HAHPT+SE + E
Sbjct: 549 GLAKMIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKLAVHAHPTLSEVVDE 608
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,339,139
Number of extensions: 36945
Number of successful extensions: 81
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 4
Length of query: 72
Length of database: 11,106,569
Length adjustment: 44
Effective length of query: 28
Effective length of database: 9,900,265
Effective search space: 277207420
Effective search space used: 277207420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)