BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0156200 Os05g0156200|AK071622
         (288 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25920.1  | chr2:11054425-11055916 REVERSE LENGTH=281          161   4e-40

>AT2G25920.1 | chr2:11054425-11055916 REVERSE LENGTH=281
          Length = 280

 Score =  161 bits (408), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 111/181 (61%), Gaps = 12/181 (6%)

Query: 20  KRGRDPEEDVYVDNLHSHKRYLSEIMASSLNGLSVGDSLVDNIMESPARSENTSYFRDEI 79
           KR RDPE++VY+DNL S KRYLSEIMA SLNGL+VGDSL  N++ESPARSE+  Y RD++
Sbjct: 42  KRTRDPEDEVYLDNLRSQKRYLSEIMACSLNGLTVGDSLPVNMLESPARSESFLYHRDDL 101

Query: 80  ISQYSPMSEDSDDYRCYDTQLPNGSQTDAMVXXXXXXXXXXHRFQKPQSGLLSANP---- 135
             QYSPMSEDSD+ R  +      S + +            +R+Q+P +   S  P    
Sbjct: 102 SLQYSPMSEDSDEARFCEDPTATASTSSSQPESRPTSPVSPYRYQRPLTSTNSPQPSPTI 161

Query: 136 --------YXXXXXXXXXXXXXNPRRGSENEGRFPSSPNDMCHGGDLRKTALLRSVQMRV 187
                                 + +RGS+ EGRFPSSP+D+CH GDLR+TALLRSVQMR 
Sbjct: 162 LHHSHTCPASMISNAATTTTPQSRQRGSDTEGRFPSSPSDICHSGDLRRTALLRSVQMRT 221

Query: 188 Q 188
           Q
Sbjct: 222 Q 222



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,303,493
Number of extensions: 190944
Number of successful extensions: 331
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 190
Effective length of database: 8,419,801
Effective search space: 1599762190
Effective search space used: 1599762190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)