BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0154900 Os05g0154900|AK070869
         (146 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52860.1  | chr3:19591998-19592741 REVERSE LENGTH=157          122   5e-29

>AT3G52860.1 | chr3:19591998-19592741 REVERSE LENGTH=157
          Length = 156

 Score =  122 bits (307), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 65/95 (68%), Positives = 76/95 (80%), Gaps = 1/95 (1%)

Query: 53  QAVDRSLQSSHQIDVERHARDFMEAAKKLQSYFISLQREDR-PSTEEMLRKDIAIMEEEL 111
           QA+DRS   SHQIDVERHARDFMEAAKKLQ YF+ L+REDR PS  E L+KDIA+MEEEL
Sbjct: 62  QAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFMGLKREDRAPSRAESLKKDIAVMEEEL 121

Query: 112 KTKSELIDKHKKLIEGWQKELKDQLGKHVTELERV 146
           KTK ELI KH +L +  QK +K+Q+ KH  ELE+V
Sbjct: 122 KTKDELIKKHMRLFQESQKLVKEQIEKHRDELEKV 156



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,923,068
Number of extensions: 68865
Number of successful extensions: 526
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 57
Effective length of database: 8,666,545
Effective search space: 493993065
Effective search space used: 493993065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 107 (45.8 bits)