BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0153600 Os05g0153600|Os05g0153600
(313 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G30880.1 | chr2:13142926-13145718 REVERSE LENGTH=505 60 1e-09
AT5G18960.1 | chr5:6330556-6333071 FORWARD LENGTH=789 56 3e-08
AT3G06250.1 | chr3:1889771-1892065 REVERSE LENGTH=765 56 3e-08
AT3G07500.1 | chr3:2392387-2393709 FORWARD LENGTH=218 52 5e-07
AT4G38180.1 | chr4:17906702-17909404 REVERSE LENGTH=789 51 8e-07
>AT2G30880.1 | chr2:13142926-13145718 REVERSE LENGTH=505
Length = 504
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 194 LRASKQIHATEHTWLIICRQDLALIESLKIVVILYDINLHCLETLQVKDGELQNLANNIR 253
L S++I A I R L + + I L D+ + ETL+VKD EL NLA +R
Sbjct: 170 LECSREIQAAMQ---ISLRNALKITPNKPIDGPLDDLTI-MKETLRVKDEELHNLARELR 225
Query: 254 ARDATIKEIADKLXXXXXXXXXXXXXXXXMDEHRRLLCSEIERL 297
+RD+ IKEIADKL MDE R+++C E ERL
Sbjct: 226 SRDSMIKEIADKLSETAEAAVAAASAAHTMDEQRKIVCVEFERL 269
>AT5G18960.1 | chr5:6330556-6333071 FORWARD LENGTH=789
Length = 788
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 73 EEDNVALDEYWNIVQMNFQTEDECYNFYNSYAKRKGFSVRKDIVRREKRVGAIEYRRFVC 132
EE ++ Y V + F T +E FYN+YA R GF VR + R + G + RRFVC
Sbjct: 35 EEGGSGVEPY---VGLEFDTAEEAREFYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFVC 91
Query: 133 SKEGIR 138
SKEG +
Sbjct: 92 SKEGFQ 97
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 88 MNFQTEDECYNFYNSYAKRKGFSVRKDIVRREKRVGAIEYRRFVCSKEGIRDPS 141
+ F + +E FY +YA+ GF VR + R K G+I RRFVCS+EG + PS
Sbjct: 215 LEFGSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREGFQHPS 268
>AT3G06250.1 | chr3:1889771-1892065 REVERSE LENGTH=765
Length = 764
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 74 EDNVALDEYWNIVQMNFQTEDECYNFYNSYAKRKGFSVRKDIVRREKRVGAIEYRRFVCS 133
E + L+ Y V + F T +E ++YNSYA R GF VR + R + G + RRFVCS
Sbjct: 21 EGDSGLEPY---VGLEFDTAEEARDYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCS 77
Query: 134 KEGIR 138
KEG +
Sbjct: 78 KEGFQ 82
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 88 MNFQTEDECYNFYNSYAKRKGFSVRKDIVRREKRVGAIEYRRFVCSKEGIRDPS 141
+ F + +E FY +YA+ GF VR + R K G+I RRFVCSKEG + PS
Sbjct: 194 LEFNSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS 247
>AT3G07500.1 | chr3:2392387-2393709 FORWARD LENGTH=218
Length = 217
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 85 IVQMNFQTEDECYNFYNSYAKRKGFSVRKDIVRREKRVGAIEYRRFVCSKEGI 137
+ M F++E+ +FY++YA GF +R D RR R G + +RR VC+KEG
Sbjct: 34 FIGMEFESEEAAKSFYDNYATCMGFVMRVDAFRRSMRDGTVVWRRLVCNKEGF 86
>AT4G38180.1 | chr4:17906702-17909404 REVERSE LENGTH=789
Length = 788
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%)
Query: 65 SHNVFHSVEEDNVALDEYWNIVQMNFQTEDECYNFYNSYAKRKGFSVRKDIVRREKRVGA 124
S N F + EE+ L + + F++E+ FYNSYA+R GFS R RR +R GA
Sbjct: 54 SGNYFPNQEEEACDLLDLEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGA 113
Query: 125 IEYRRFVCSKEGIRDPSLVKPEDRE 149
I R+FVC+KEG R+ + + +DRE
Sbjct: 114 IIQRQFVCAKEGFRNMNEKRTKDRE 138
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,196,077
Number of extensions: 309003
Number of successful extensions: 1063
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1063
Number of HSP's successfully gapped: 7
Length of query: 313
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 215
Effective length of database: 8,419,801
Effective search space: 1810257215
Effective search space used: 1810257215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)