BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0151300 Os05g0151300|J065063J05
         (253 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05500.1  | chr3:1593540-1594802 FORWARD LENGTH=247            189   9e-49
AT2G47780.1  | chr2:19570076-19570864 FORWARD LENGTH=236          127   4e-30
AT1G67360.2  | chr1:25237072-25237913 REVERSE LENGTH=241           98   5e-21

>AT3G05500.1 | chr3:1593540-1594802 FORWARD LENGTH=247
          Length = 246

 Score =  189 bits (481), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 94/211 (44%), Positives = 132/211 (62%), Gaps = 11/211 (5%)

Query: 34  RLRYLEFXXXXXXXXXXXXXXXXXXXKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPL 93
           RL+YL+F                   K  +GPL+PGV+ VEG VK VVGPVY+++H VP+
Sbjct: 21  RLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPV 80

Query: 94  DLLKFLDRKVGESVQELDRRVPPVVKEA-----------PGLARSAAAEVRQAGLVGTAT 142
           ++LK++D+KV  SV ELDRRVPPVVK+            P +AR+ A+EVR+AG+V TA+
Sbjct: 81  EVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETAS 140

Query: 143 GLAKSAIARAEPRARDLYTRYEPVXXXXXXXXXXXLNRLPLVPSVTRAVLPAAASLSARY 202
           G+AKS  ++ EP A++LY  YEP            LN+LPL P + +  +P AA  S +Y
Sbjct: 141 GMAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKY 200

Query: 203 NTAVADGAKRGSAVATYLPLVPTERLSRVFG 233
           N  V   A++G  V +Y+PLVPTER+S++F 
Sbjct: 201 NDTVVKAAEKGYRVTSYMPLVPTERISKIFA 231



>AT2G47780.1 | chr2:19570076-19570864 FORWARD LENGTH=236
          Length = 235

 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 103/198 (52%), Gaps = 11/198 (5%)

Query: 34  RLRYLEFXXXXXXXXXXXXXXXXXXXKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPL 93
           +L++LEF                   K  AGPL+ GV+++E  V+ V+ P+Y++FH VP 
Sbjct: 40  KLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPF 99

Query: 94  DLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE 153
            LL F+DRKV +   +++  VP +VK+A   A + A EV++ G+V T   +A+S      
Sbjct: 100 KLLLFVDRKVDDVFFDVETYVPSLVKQASSQALTVATEVQRTGVVDTTKSIARS------ 153

Query: 154 PRARDLYTRYEPVXXXXXXXXXXXLNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRG 213
              RD   +YEP            LN+LPL P V   V+P A   S +YN AV     R 
Sbjct: 154 --VRD---KYEPAAEYYAATLWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRD 208

Query: 214 SAVATYLPLVPTERLSRV 231
              A YLP++P E++S +
Sbjct: 209 YFGAEYLPMIPIEKISDI 226



>AT1G67360.2 | chr1:25237072-25237913 REVERSE LENGTH=241
          Length = 240

 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 92/204 (45%), Gaps = 16/204 (7%)

Query: 35  LRYLEFXXXXXXXXXXXXXXXXXXXKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLD 94
           L++L F                   KQ +GPL+  V+ VEG V  VV PVY +F  VP  
Sbjct: 13  LKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDS 72

Query: 95  LLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAG-LVGTATGLAKSAIARAE 153
           LL FLD KVGE   + D   PP+ K+           V QA  L+  AT  A+S +  A 
Sbjct: 73  LLVFLDHKVGEVSYKFDEHAPPMAKKV----------VNQAHVLIYKATEKAQSFVKEAR 122

Query: 154 ---PRARDLY--TRYEPVXXXXXXXXXXXLNRLPLVPSVTRAVLPAAASLSARYNTAVAD 208
              P+A   Y  T Y+             LN+   + ++    LP AA  S+RYN  V D
Sbjct: 123 TGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTD 182

Query: 209 GAKRGSAVATYLPLVPTERLSRVF 232
               G ++  YLPLVP + + + +
Sbjct: 183 MTNMGYSLVGYLPLVPVDDIVKAY 206



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,923,559
Number of extensions: 128272
Number of successful extensions: 265
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 3
Length of query: 253
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 157
Effective length of database: 8,474,633
Effective search space: 1330517381
Effective search space used: 1330517381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)