BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0146100 Os05g0146100|AK106767
         (614 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27660.1  | chr5:9789835-9792235 REVERSE LENGTH=429             62   1e-09

>AT5G27660.1 | chr5:9789835-9792235 REVERSE LENGTH=429
          Length = 428

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 127/267 (47%), Gaps = 31/267 (11%)

Query: 242 GKSLSKS--SGFMIDWDEKSKTGTILTSALLICKQSPSLDDWKSANQYASNAKVAVRFVD 299
           G S+ KS  SG +ID D     GTILT A ++        D+++  +++S  +V V   D
Sbjct: 141 GISMGKSIGSGTIIDAD-----GTILTCAHVVV-------DFQNI-RHSSKGRVDVTLQD 187

Query: 300 GTTVEGHFLYCQEHYNLAFYKIVVDRSIHLPS----FNEGVKWAEEVFILGRDENSYLRT 355
           G T EG  +      ++A  KI       LP+    F+  ++  + V  +G   +     
Sbjct: 188 GRTFEGVVVNADLQSDIALVKI--KSKTPLPTAKLGFSSKLRPGDWVIAVGCPLSLQNTV 245

Query: 356 SYGRVQYLNPHMNER----RHYVYIDGFSAPPEYYNGGPVIDLRGDVVGMSIRSTR---- 407
           + G V  ++   ++     +H  Y+    +     +GGP+++L G+V+G++I        
Sbjct: 246 TAGIVSCVDRKSSDLGLGGKHREYLQTDCSINAGNSGGPLVNLDGEVIGVNIMKVLAADG 305

Query: 408 -GSFIPSNIILKCLQMWRKFQCIPRPHLQMKFWGMKFLNPAHL-EVISCKCNIDEGLIVK 465
            G  +P + + K ++ ++K   + RP + +K   +  L  A L E      +++ G++V 
Sbjct: 306 LGFSVPIDSVSKIIEHFKKSGRVIRPWIGLKMVELNNLIVAQLKERDPMFPDVERGVLVP 365

Query: 466 EVSEGSIAEKLGVRVGDVIKFFNGKHI 492
            V  GS A++ G + GDV+  F+GK +
Sbjct: 366 TVIPGSPADRAGFKPGDVVVRFDGKPV 392



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,522,163
Number of extensions: 489692
Number of successful extensions: 1014
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1013
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 510
Effective length of database: 8,255,305
Effective search space: 4210205550
Effective search space used: 4210205550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)