BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0144900 Os05g0144900|AK064563
(227 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35840.1 | chr2:15053952-15055776 FORWARD LENGTH=423 246 5e-66
AT3G54270.1 | chr3:20087419-20089735 REVERSE LENGTH=426 235 1e-62
AT1G51420.1 | chr1:19064852-19066704 REVERSE LENGTH=424 235 1e-62
AT3G52340.1 | chr3:19407412-19409182 FORWARD LENGTH=424 219 7e-58
>AT2G35840.1 | chr2:15053952-15055776 FORWARD LENGTH=423
Length = 422
Score = 246 bits (629), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 117/189 (61%), Positives = 146/189 (77%), Gaps = 1/189 (0%)
Query: 3 QGPHKVSFFVDKEGAREVMDSLPETLNRRGLDVKIIFSSGEALDVLPQGAGKGQALLYLL 62
Q PHKVSF+V+K A+EV L + +RGLDVKII+S G LD+LPQGAGKGQAL YLL
Sbjct: 125 QRPHKVSFYVEKSKAQEVTKELSQRFLKRGLDVKIIYSGGMDLDILPQGAGKGQALAYLL 184
Query: 63 KKFNSDGKPPNSTLVCGDSGNDAELFSVPSVHGVMVSNAQEELLQWYEENARGNPMMIHA 122
KK ++GK P +TL CGDSGNDAELFS+P V+GVMVSNAQEELL+W+ ENA+ NP +IHA
Sbjct: 185 KKLKTEGKLPVNTLACGDSGNDAELFSIPDVYGVMVSNAQEELLKWHAENAKDNPKVIHA 244
Query: 123 TERCAAGIMQAIGHFNLGPNVSPRDL-EFPYPKLDAIKPADVVVKFYVLYEKWRQGEVQK 181
ERCA GI+QAIGHF LGPN+SPRD+ +F K++ + P VVKF++ YE+WR+GEV+
Sbjct: 245 KERCAGGIIQAIGHFKLGPNLSPRDVSDFLEIKVENVNPGHEVVKFFLFYERWRRGEVEN 304
Query: 182 APFIIQYLK 190
+ LK
Sbjct: 305 SEAYTASLK 313
>AT3G54270.1 | chr3:20087419-20089735 REVERSE LENGTH=426
Length = 425
Score = 235 bits (600), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 112/194 (57%), Positives = 148/194 (76%), Gaps = 1/194 (0%)
Query: 1 RSQGPHKVSFFVDKEGAREVMDSLPETLNRRGLDVKIIFSSGEALDVLPQGAGKGQALLY 60
+SQ HKVSFFV +E A E+M LP L RG+DVK+++S+G A DVLP+GAGK AL Y
Sbjct: 125 KSQEEHKVSFFVGREDAVEIMKVLPGILEERGVDVKLVYSNGYAFDVLPRGAGKQGALTY 184
Query: 61 LLKKFNSDGKPPNSTLVCGDSGNDAELFSVPSVHGVMVSNAQEELLQWYEENARGNPMMI 120
LL K + +GK P++TLVCGDSGNDAELF++ V+GVMVSN+ EELLQWYEENA+ NP +
Sbjct: 185 LLDKLDIEGKQPSNTLVCGDSGNDAELFNISDVYGVMVSNSHEELLQWYEENAKDNPKIF 244
Query: 121 HATERCAAGIMQAIGHFNLGPNVSPRD-LEFPYPKLDAIKPADVVVKFYVLYEKWRQGEV 179
HA+ERC AG+++AI FNLGPNVSPRD ++ +++ PA VV+FY+ YE+WR GEV
Sbjct: 245 HASERCGAGMIEAIQRFNLGPNVSPRDVMDTENFHGESLNPAHEVVQFYLFYERWRCGEV 304
Query: 180 QKAPFIIQYLKRIT 193
+K+ +Q LK ++
Sbjct: 305 EKSDKYLQNLKSLS 318
>AT1G51420.1 | chr1:19064852-19066704 REVERSE LENGTH=424
Length = 423
Score = 235 bits (599), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 111/189 (58%), Positives = 137/189 (72%), Gaps = 1/189 (0%)
Query: 3 QGPHKVSFFVDKEGAREVMDSLPETLNRRGLDVKIIFSSGEALDVLPQGAGKGQALLYLL 62
Q PHK+SF +DK + V L L +RG+DVK IFS G A DVL +G GKGQAL YLL
Sbjct: 126 QRPHKLSFNIDKSKVKAVTKELSPRLEKRGVDVKFIFSGGNAFDVLAKGGGKGQALAYLL 185
Query: 63 KKFNSDGKPPNSTLVCGDSGNDAELFSVPSVHGVMVSNAQEELLQWYEENARGNPMMIHA 122
KK ++GK P +TL CGDSGND ELF++P+V+GVMVSNAQEELL+WY ENA+ N +IHA
Sbjct: 186 KKLKTEGKLPINTLACGDSGNDTELFTIPNVYGVMVSNAQEELLEWYAENAKDNANIIHA 245
Query: 123 TERCAAGIMQAIGHFNLGPNVSPRDL-EFPYPKLDAIKPADVVVKFYVLYEKWRQGEVQK 181
+ERCA GI QAIGHF LGPN+SPRD+ +F K D + P VVKF++ YE+WR+GEV+
Sbjct: 246 SERCAGGITQAIGHFKLGPNLSPRDVSDFLECKADNVNPGHEVVKFFLFYERWRRGEVEN 305
Query: 182 APFIIQYLK 190
LK
Sbjct: 306 CTTYTSSLK 314
>AT3G52340.1 | chr3:19407412-19409182 FORWARD LENGTH=424
Length = 423
Score = 219 bits (559), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 106/189 (56%), Positives = 139/189 (73%), Gaps = 1/189 (0%)
Query: 3 QGPHKVSFFVDKEGAREVMDSLPETLNRRGLDVKIIFSSGEALDVLPQGAGKGQALLYLL 62
Q HKVSF++D+ + L + L +RGLDVKII+S G+ +DV+P+GAGKG+AL YLL
Sbjct: 126 QRLHKVSFYIDEGKGEALTKELSQLLEKRGLDVKIIYSWGKNVDVIPRGAGKGEALEYLL 185
Query: 63 KKFNSDGKPPNSTLVCGDSGNDAELFSVPSVHGVMVSNAQEELLQWYEENARGNPMMIHA 122
KK ++G P +TL CGDS +DAELFS+P VHGVMVSN+QEELL+W ENA N +IH+
Sbjct: 186 KKLQAEGIFPVNTLACGDSEHDAELFSIPDVHGVMVSNSQEELLKWRSENALNNLKVIHS 245
Query: 123 TERCAAGIMQAIGHFNLGPNVSPRDL-EFPYPKLDAIKPADVVVKFYVLYEKWRQGEVQK 181
TERCA GI+QAIGHFNLGP++SPRD+ EF K+D + P VV+FY+ YE+ R+GE++
Sbjct: 246 TERCADGIIQAIGHFNLGPDLSPRDVSEFLDRKMDNVNPGHEVVRFYLFYERLRRGEIKN 305
Query: 182 APFIIQYLK 190
I K
Sbjct: 306 YETYIASFK 314
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.138 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,268,760
Number of extensions: 229601
Number of successful extensions: 517
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 518
Number of HSP's successfully gapped: 4
Length of query: 227
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 132
Effective length of database: 8,502,049
Effective search space: 1122270468
Effective search space used: 1122270468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)