BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0140500 Os05g0140500|J100061D12
         (158 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51510.1  | chr1:19103072-19104753 REVERSE LENGTH=203          119   5e-28

>AT1G51510.1 | chr1:19103072-19104753 REVERSE LENGTH=203
          Length = 202

 Score =  119 bits (299), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 84/125 (67%), Gaps = 12/125 (9%)

Query: 36  RLRSTIAXXXXXXXXXXXXQRKTKGRGFRDDA-APRDSRLAGAGRASDFDSLGSDGGPGP 94
           RL+S IA             +KTKGRGFR++  + R  RL+    + DF+SLGSDG PGP
Sbjct: 39  RLKSAIAGANGESA------KKTKGRGFREEKDSDRQRRLS----SRDFESLGSDGRPGP 88

Query: 95  VRSIEGWIVLVTGVHEEAQEDDLHNIFRDFGQVKNLHLNLDRRTGFVK-VCLFQYCNVSS 153
            RS+EGWI+LV+GVHEE QE+D+ N F DFG++KNL+LNLDRR+G+VK   L +Y     
Sbjct: 89  QRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEE 148

Query: 154 PVAAL 158
             +A+
Sbjct: 149 AQSAI 153



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,598,110
Number of extensions: 105324
Number of successful extensions: 311
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 68
Effective length of database: 8,639,129
Effective search space: 587460772
Effective search space used: 587460772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)