BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0123100 Os05g0123100|AK120892
(371 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G37090.1 | chr2:15587671-15589223 REVERSE LENGTH=352 215 4e-56
AT1G27600.1 | chr1:9604083-9605881 REVERSE LENGTH=395 158 4e-39
AT5G67230.1 | chr5:26822506-26824181 FORWARD LENGTH=493 54 1e-07
AT4G36890.1 | chr4:17379631-17381627 REVERSE LENGTH=526 52 5e-07
>AT2G37090.1 | chr2:15587671-15589223 REVERSE LENGTH=352
Length = 351
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 103/202 (50%), Positives = 135/202 (66%), Gaps = 22/202 (10%)
Query: 162 TGVMYRHLAFRPEENFTTADAEAHAQRNAALAHVEKHRLSGVVHFADAAGVYDAHFFDEI 221
TG+MYR + F+ E+FT+ ++E QRN AL H+E H+LSG+VHFA +YD FF +I
Sbjct: 171 TGIMYRRIVFK--EDFTSLESELDHQRNLALRHIEHHKLSGIVHFAGLNNIYDLDFFVKI 228
Query: 222 RQIEAFGTWPVATMSAGEKKVVVEGPLCSDSKVVGWFSRDFNDGTTRAVTYNTEADLNPA 281
R IE FGTWP+A +SA K+VVVEGP+C S+V+GW R N+ E + P
Sbjct: 229 RDIEVFGTWPMALLSANRKRVVVEGPVCESSQVLGWHLRKINN----------ETETKPP 278
Query: 282 GAAGTRAHTIDVSGFAFNSSILWDPERWGRPTSLPDTSQDSIKFVQEVVLEDRTKLKGIP 341
I +S FAFNSSILWDPERWGRP+S+ T QDSIK+V++VVLED TKLKG+P
Sbjct: 279 ---------IHISSFAFNSSILWDPERWGRPSSVEGTKQDSIKYVKQVVLEDDTKLKGLP 329
Query: 342 S-DCSQIMVWQYTMPMQVHAQT 362
+ DCS+IM+W+ P + T
Sbjct: 330 AQDCSKIMLWRLKFPTRTRLST 351
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 31/37 (83%), Gaps = 2/37 (5%)
Query: 6 VAAAERPKQRRSSHLWKKALLHFSLCFVMGFFTGFAP 42
+ + ER K++ + +WKKA++HFSLCFVMGFFTGFAP
Sbjct: 1 MGSLERSKKK--AQVWKKAVIHFSLCFVMGFFTGFAP 35
>AT1G27600.1 | chr1:9604083-9605881 REVERSE LENGTH=395
Length = 394
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 114/196 (58%), Gaps = 30/196 (15%)
Query: 162 TGVMYRHLAFRPEENFTTADAEAHAQRNAALAHVEKHRLSGVVHFADAAGVYDAHFFDEI 221
TGVMYRHL + N T+ QRN AL H+E H+L G+V+FAD +Y F +
Sbjct: 194 TGVMYRHLVCK--RNMTSIKDRGVHQRNTALEHIELHKLDGIVYFADDDNIYSLELFQSL 251
Query: 222 RQIEAFGTWPVATMSAGEKKVVVEGPLCSDSKVVGWFSRDFNDGTTRAVTYNTEADLNPA 281
RQI FGTWPVA ++ + K ++EGP+C+ S+V+GW + N+ + R
Sbjct: 252 RQISRFGTWPVAMLAQSKNKAILEGPVCNGSQVIGWHT---NEKSKR------------- 295
Query: 282 GAAGTRAHTIDVSGFAFNSSILWDPERWGRPTSLPDTSQDSIK-------FVQEVVLEDR 334
R +D+SGFAFNS+ILWDP+RW RP S P D++K F+++VV D
Sbjct: 296 ----LRRFHVDMSGFAFNSTILWDPKRWRRPFSHPTRQLDTVKEGFQETSFIEQVV-ADE 350
Query: 335 TKLKGIPSDCSQIMVW 350
++++G+P CS I+ W
Sbjct: 351 SEMEGVPPACSSILNW 366
>AT5G67230.1 | chr5:26822506-26824181 FORWARD LENGTH=493
Length = 492
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 90/216 (41%), Gaps = 35/216 (16%)
Query: 162 TGVMYRHLAFRPEENFTTADAEA--HAQRNAALAHVEKHRLSGVVHFADAAGVYDAHFFD 219
+G+ HL F + T D R AL V + +L G+V FAD + ++ FD
Sbjct: 205 SGLKTIHLGFDQKMPNTWEDRHKLETKMRLHALRVVREKKLDGIVMFADDSNMHSMELFD 264
Query: 220 EIRQIEAFGTWPVATMS---------------AGEKK----VVVEGPLCSDS-KVVGWFS 259
EI+ ++ FG V ++ G+ K + ++GP C+ S K+VGW
Sbjct: 265 EIQTVKWFGALSVGILAHSGNADELSSILKNEQGKNKEKPSMPIQGPSCNSSEKLVGWHI 324
Query: 260 RDFNDGTTRAVTYNTEADLNPAGAAGTRAHTIDVSGFAFNSSILW-----DPERWGRPTS 314
+ + Y E A ++ SGF NS +LW D W + S
Sbjct: 325 FNTQPYAKKTAVYIDE-------KAPVMPSKMEWSGFVLNSRLLWKESLDDKPAWVKDLS 377
Query: 315 LPDTSQDSIKFVQEVVLEDRTKLKGIPSDCSQIMVW 350
L D I+ +V +D + ++ + S ++++W
Sbjct: 378 LLDDGYAEIESPLSLV-KDPSMVEPLGSCGRRVLLW 412
>AT4G36890.1 | chr4:17379631-17381627 REVERSE LENGTH=526
Length = 525
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 35/190 (18%)
Query: 188 RNAALAHVEKHRLSGVVHFADAAGVYDAHFFDEIRQIEAFGTWPVATMS---AGEKKVV- 243
R AL V + +L G+V FAD + ++ FDEI+ ++ FGT V ++ E+ V+
Sbjct: 241 RLQALRVVREEKLDGIVMFADDSNMHSMELFDEIQNVKWFGTVSVGILAHSGNAEEMVLS 300
Query: 244 -------------------VEGPLC-SDSKVVGWFSRDFNDGTTRAVTYNTEADLNPAGA 283
V+GP C S +++GW FN + Y ++ +
Sbjct: 301 MEKRKEMEKEEEEESSSLPVQGPACNSTDQLIGW--HIFN-----TLPYAGKSAVYIDDV 353
Query: 284 AGTRAHTIDVSGFAFNSSILWDPERWGRPTSLPD-TSQDSIKFVQE--VVLEDRTKLKGI 340
A ++ SGF NS +LW+ E +P + D S + + V+ +L+D + ++ +
Sbjct: 354 AAVLPQKLEWSGFVLNSRLLWE-EAENKPEWVKDFGSLNENEGVESPLSLLKDPSMVEPL 412
Query: 341 PSDCSQIMVW 350
S Q+++W
Sbjct: 413 GSCGRQVLLW 422
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.131 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,976,588
Number of extensions: 209271
Number of successful extensions: 450
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 5
Length of query: 371
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 271
Effective length of database: 8,364,969
Effective search space: 2266906599
Effective search space used: 2266906599
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)