BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0120700 Os05g0120700|AK062874
(281 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G07810.1 | chr1:2416681-2420572 FORWARD LENGTH=1062 436 e-123
AT1G07670.1 | chr1:2370305-2374196 REVERSE LENGTH=1062 435 e-122
AT4G00900.1 | chr4:382690-386226 REVERSE LENGTH=1055 371 e-103
AT1G10130.1 | chr1:3311139-3321941 FORWARD LENGTH=999 196 1e-50
>AT1G07810.1 | chr1:2416681-2420572 FORWARD LENGTH=1062
Length = 1061
Score = 436 bits (1120), Expect = e-123, Method: Compositional matrix adjust.
Identities = 207/271 (76%), Positives = 231/271 (85%), Gaps = 2/271 (0%)
Query: 13 RYMISSNIGEVASIFLTSALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPP 72
RYMISSNIGEVASIFLT+ALGIPEG+IPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPP
Sbjct: 791 RYMISSNIGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPP 850
Query: 73 RKSDDSLITPWILFRYLVIGLYVGIATVGIFVIWYTHGSFMGIDLTGDGHTLVSYSQLSN 132
R+SDDSLIT WILFRY+VIGLYVG+ATVG+F+IWYTH SFMGIDL+ DGH+LVSYSQL++
Sbjct: 851 RRSDDSLITAWILFRYMVIGLYVGVATVGVFIIWYTHSSFMGIDLSQDGHSLVSYSQLAH 910
Query: 133 WGQCSTWNNFTVTPFTAGARTFTFDDNPCEYFHGGKVKATTLSLSVLVAIEMFNSLNALS 192
WGQCS+W F V+PFTAG++TF+FD NPC+YF GK+KA+TLSLSVLVAIEMFNSLNALS
Sbjct: 911 WGQCSSWEGFKVSPFTAGSQTFSFDSNPCDYFQQGKIKASTLSLSVLVAIEMFNSLNALS 970
Query: 193 EDTSLLRMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIXXXXXXXXXXXXXXXXXX 252
ED SL+ MPPWVNPWLLLAM+VSFGLHF+ILYVPFLAQVFGI
Sbjct: 971 EDGSLVTMPPWVNPWLLLAMAVSFGLHFVILYVPFLAQVFGIVPLSLNEWLLVLAVSLPV 1030
Query: 253 XXIDEVLKFVGRCTS--SSGPKRRTRKQKGE 281
IDEVLKFVGRCTS P+ + KQK E
Sbjct: 1031 ILIDEVLKFVGRCTSGYRYSPRTLSTKQKEE 1061
>AT1G07670.1 | chr1:2370305-2374196 REVERSE LENGTH=1062
Length = 1061
Score = 435 bits (1118), Expect = e-122, Method: Compositional matrix adjust.
Identities = 207/271 (76%), Positives = 231/271 (85%), Gaps = 2/271 (0%)
Query: 13 RYMISSNIGEVASIFLTSALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPP 72
RYMISSNIGEVASIFLT+ALGIPEG+IPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPP
Sbjct: 791 RYMISSNIGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPP 850
Query: 73 RKSDDSLITPWILFRYLVIGLYVGIATVGIFVIWYTHGSFMGIDLTGDGHTLVSYSQLSN 132
R+SDDSLIT WILFRY+VIGLYVG+ATVG+F+IWYTH SFMGIDL+ DGH+LVSYSQL++
Sbjct: 851 RRSDDSLITAWILFRYMVIGLYVGVATVGVFIIWYTHNSFMGIDLSQDGHSLVSYSQLAH 910
Query: 133 WGQCSTWNNFTVTPFTAGARTFTFDDNPCEYFHGGKVKATTLSLSVLVAIEMFNSLNALS 192
WGQCS+W F V+PFTAG++TF+FD NPC+YF GK+KA+TLSLSVLVAIEMFNSLNALS
Sbjct: 911 WGQCSSWEGFKVSPFTAGSQTFSFDSNPCDYFQQGKIKASTLSLSVLVAIEMFNSLNALS 970
Query: 193 EDTSLLRMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIXXXXXXXXXXXXXXXXXX 252
ED SL+ MPPWVNPWLLLAM+VSFGLHF+ILYVPFLAQVFGI
Sbjct: 971 EDGSLVTMPPWVNPWLLLAMAVSFGLHFVILYVPFLAQVFGIVPLSLNEWLLVLAVSLPV 1030
Query: 253 XXIDEVLKFVGRCTSS--SGPKRRTRKQKGE 281
IDEVLKFVGRCTS P+ + KQK E
Sbjct: 1031 ILIDEVLKFVGRCTSGYRYSPRTPSAKQKEE 1061
>AT4G00900.1 | chr4:382690-386226 REVERSE LENGTH=1055
Length = 1054
Score = 371 bits (952), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/270 (68%), Positives = 206/270 (76%), Gaps = 10/270 (3%)
Query: 13 RYMISSNIGEVASIFLTSALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPP 72
RYMISSN+GEV SIFLT+ALGIPE +IPVQLLWVNLVTDGPPATALGFNP D DIMKKPP
Sbjct: 787 RYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADIDIMKKPP 846
Query: 73 RKSDDSLITPWILFRYLVIGLYVGIATVGIFVIWYTHGSFMGIDLTGDGHTLVSYSQLSN 132
RKSDD LI W+L RYLVIG YVG+ATVGIFV+WYT SF+GI L DGHTLVS++QL N
Sbjct: 847 RKSDDCLIDSWVLIRYLVIGSYVGVATVGIFVLWYTQASFLGISLISDGHTLVSFTQLQN 906
Query: 133 WGQCSTW-NNFTVTPFT--AGARTFTFDDNPCEYFHGGKVKATTLSLSVLVAIEMFNSLN 189
W +CS+W NFT TP+T G RT F++NPC+YF GKVK TLSL+VLVAIEMFNSLN
Sbjct: 907 WSECSSWGTNFTATPYTVAGGLRTIAFENNPCDYFTLGKVKPMTLSLTVLVAIEMFNSLN 966
Query: 190 ALSEDTSLLRMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIXXXXXXXXXXXXXXX 249
ALSED SLL MPPW NPWLL+AM+VSF LH +ILYVPFLA VFGI
Sbjct: 967 ALSEDNSLLTMPPWRNPWLLVAMTVSFALHCVILYVPFLANVFGIVPLSFREWFVVILVS 1026
Query: 250 XXXXXIDEVLKFVGRCTSSSGPKRRTRKQK 279
IDE LKF+GRC RRTR +K
Sbjct: 1027 FPVILIDEALKFIGRC-------RRTRIKK 1049
>AT1G10130.1 | chr1:3311139-3321941 FORWARD LENGTH=999
Length = 998
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/269 (43%), Positives = 158/269 (58%), Gaps = 30/269 (11%)
Query: 13 RYMISSNIGEVASIFLTSALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPP 72
RYMISSNIGEV IF+ + LGIP+ L PVQLLWVNLVTDG PATA+GFN D D+MK P
Sbjct: 751 RYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKP 810
Query: 73 RKSDDSLITPWILFRYLVIGLYVGIATVGIFVIWYTHGSFMGIDLTGDGHTLVSYSQLSN 132
RK ++++T W+ FRYLVIG+YVG+ATV F+ W+ + DG ++YS+L N
Sbjct: 811 RKVGEAVVTGWLFFRYLVIGVYVGLATVAGFIWWFVY---------SDGGPKLTYSELMN 861
Query: 133 WGQCSTWNNFTVTPFTAGARTFTFDDNPCEYFHGGKVKATTLSLSVLVAIEMFNSLNALS 192
+ C+ R T+ PC F +T++++VLV +EMFN+LN LS
Sbjct: 862 FETCAL-------------RETTY---PCSIFEDR--HPSTVAMTVLVVVEMFNALNNLS 903
Query: 193 EDTSLLRMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIXXXXXXXXXXXXXXXXXX 252
E+ SLL + P N WL+ ++ ++ LH LILYV LA +F +
Sbjct: 904 ENQSLLVITPRSNLWLVGSIILTMLLHVLILYVHPLAVLFSVTPLSWAEWTAVLYLSFPV 963
Query: 253 XXIDEVLKFVGRCTSSSGPKRRTRKQKGE 281
IDE+LKF+ R T G + R R +K +
Sbjct: 964 IIIDELLKFLSRNT---GMRFRFRLRKAD 989
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.141 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,026,357
Number of extensions: 247186
Number of successful extensions: 679
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 673
Number of HSP's successfully gapped: 4
Length of query: 281
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 184
Effective length of database: 8,447,217
Effective search space: 1554287928
Effective search space used: 1554287928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)