BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0119600 Os05g0119600|AK110829
         (168 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44580.1  | chr2:18402081-18403412 REVERSE LENGTH=387          189   6e-49

>AT2G44580.1 | chr2:18402081-18403412 REVERSE LENGTH=387
          Length = 386

 Score =  189 bits (480), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 88/168 (52%), Positives = 122/168 (72%), Gaps = 2/168 (1%)

Query: 1   MPENDVLDVMESDGFMRKIVTHCLNRFGTKVDKEARGCWSLDERRVCLQFARRALGAGKM 60
           + E++V++ + +D F  ++ +HCL  FG+KV++  +  W L+ R VCL FAR+ L   KM
Sbjct: 221 LDEDEVVNALVADEFPSQLASHCLRVFGSKVNETDK--WKLEPRLVCLHFARQILREEKM 278

Query: 61  KLENFMGKWERSIPSGMRADLQMLEGEVLCEKLGAETWVHAFSVADLPLAPADRFAALFQ 120
           +LE+FM +W++ IP GM    +MLEGEVL EK+G ET V+ FSV  LP  P +RF+ LF+
Sbjct: 279 RLESFMEEWKKKIPDGMEERFEMLEGEVLTEKIGIETRVYTFSVRSLPSTPEERFSVLFK 338

Query: 121 ERPKWEWKDLQPYIRDLRVPGVSSEGLLIKYTRKTQPSADAEPIFTAR 168
            R KWEWKDL+PY+RDL VP +S EGLL+KYTR+ QP ADA P+F+AR
Sbjct: 339 HRSKWEWKDLEPYLRDLHVPRLSMEGLLLKYTRRAQPKADAPPVFSAR 386



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,838,495
Number of extensions: 157259
Number of successful extensions: 280
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 77
Effective length of database: 8,611,713
Effective search space: 663101901
Effective search space used: 663101901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)