BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0115900 Os05g0115900|AK069009
(541 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G55260.1 | chr3:20489317-20492858 FORWARD LENGTH=542 711 0.0
AT1G65590.1 | chr1:24385996-24390989 FORWARD LENGTH=536 561 e-160
AT1G05590.1 | chr1:1669871-1671686 FORWARD LENGTH=581 246 2e-65
>AT3G55260.1 | chr3:20489317-20492858 FORWARD LENGTH=542
Length = 541
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/516 (65%), Positives = 399/516 (77%), Gaps = 14/516 (2%)
Query: 36 PVYLWPLPRNFTSGSRTLLVDPDLXXXXXXXXXXXXXXXXXFERYRSLVFSPWAHAARNA 95
P YLWPLP F+ G+ TL VDP + F+RY ++F HA+
Sbjct: 30 PPYLWPLPAEFSFGNETLSVDPTVTLIVAGNGGGSLIIRAAFDRYMGIIFK---HASGRG 86
Query: 96 S----------GGYDVGKLTVVVASADEKLELGVDESYTIYVAAAGGVNSIVGGATIEAN 145
S YD+ L +VV S E+L+LGVDESYT+ V+ SIVG ATIEAN
Sbjct: 87 SLLSRIRFLKMVEYDITSLKIVVHSDSEELQLGVDESYTLMVSKKNE-QSIVGAATIEAN 145
Query: 146 TIYGAIRGLETFSQLCVFNYDTKNVEVRHAPWYIEDEPRFAFRGLLLDTSRHFLPVDVIK 205
T+YGA+RGLETFSQLC F+Y TK+V++ APWYI+D+PRF +RGLL+DTSRH+LP+DVIK
Sbjct: 146 TVYGALRGLETFSQLCAFDYITKSVQIYKAPWYIQDKPRFGYRGLLIDTSRHYLPIDVIK 205
Query: 206 QVIDSMSFSKLNVLHWHIIDEQSFPLEVPSYPKLWKGSYSKLERYTVEDARDIVSYARKR 265
Q+I+SMSF+KLNVLHWHI+DEQSFPLE P+YP LWKG+YS+ ERYTVEDA +IV +A+ R
Sbjct: 206 QIIESMSFAKLNVLHWHIVDEQSFPLETPTYPNLWKGAYSRWERYTVEDASEIVRFAKMR 265
Query: 266 GIHVMAEIDVPGHAESWGKGYPKLWPSPKCREPLDVTSNFTFEVISGILSDMRKIFPFGL 325
GI+VMAE+DVPGHAESWG GYP LWPS CREPLDVT NFTF+VISGIL+DMRKIFPF L
Sbjct: 266 GINVMAEVDVPGHAESWGTGYPDLWPSLSCREPLDVTKNFTFDVISGILADMRKIFPFEL 325
Query: 326 FHLGGDEVYTGCWNATPHVKQWLHERNMTTKDAYKYFVLKAQEIAINLNWIPVNWEETFN 385
FHLGGDEV T CW T HVK+WL RN TTKDAYKYFVL+AQ+IAI+ NW PVNWEETF+
Sbjct: 326 FHLGGDEVNTDCWKNTTHVKEWLQGRNFTTKDAYKYFVLRAQQIAISKNWTPVNWEETFS 385
Query: 386 SFKENLNPLTVVHNWLGPGVCPKVVEKGFRCIMSNQGVWYLDHLDVPWQDFYTSEPLAGI 445
SF ++L+P TV+ NWL +C K V KGFRCI SNQG WYLDHLDVPW++ Y +EPL GI
Sbjct: 386 SFGKDLDPRTVIQNWLVSDICQKAVAKGFRCIFSNQGYWYLDHLDVPWEEVYNTEPLNGI 445
Query: 446 NNTAQQKLVLGGEVCMWGETADTSDVQQTIWPRAAAAAERMWSQLEAISAQDLETTVLAR 505
+ + QKLV+GGEVCMWGETADTS V QTIWPRAAAAAERMWS EA+S ++ T L R
Sbjct: 446 EDPSLQKLVIGGEVCMWGETADTSVVLQTIWPRAAAAAERMWSTREAVSKGNITLTALPR 505
Query: 506 LHYFRCLLNHRGIAAAPVTNSYARRPPIGPGSCFIQ 541
LHYFRCLLN+RG+ AAPV N YARRPP+GPGSC+ Q
Sbjct: 506 LHYFRCLLNNRGVPAAPVDNFYARRPPLGPGSCYAQ 541
>AT1G65590.1 | chr1:24385996-24390989 FORWARD LENGTH=536
Length = 535
Score = 561 bits (1445), Expect = e-160, Method: Compositional matrix adjust.
Identities = 275/513 (53%), Positives = 348/513 (67%), Gaps = 13/513 (2%)
Query: 35 EPVYLWPLPRNFTSGSRTLLVDPD--LXXXXXXXXXXXXXXXXXFERYRSLV-FSPWAHA 91
E + +WPLP + G R + + D L F+R +V S
Sbjct: 30 ERLRIWPLPAQVSHGGRRMYLSGDFKLVTEGSKYGDASGILKEGFDRMLGVVRLSHVISG 89
Query: 92 ARNASGGYD---VGKLTVVVASADEKLELGVDESYTIYVAAAGGVNSIVGGATIEANTIY 148
RN+SG + L V+++S+ ++LE G DESY + V + + A +EA ++Y
Sbjct: 90 DRNSSGTGGSALLQGLHVIISSSTDELEYGADESYKLVVPSPEKPSY----AQLEAKSVY 145
Query: 149 GAIRGLETFSQLCVFNYDTKNVEVRHAPWYIEDEPRFAFRGLLLDTSRHFLPVDVIKQVI 208
GA+ GL+TFSQLC FN K +E+ PW I D+PRF++RGLL+DTSRH+LP+ VIK VI
Sbjct: 146 GALHGLQTFSQLCHFNLKKKVIEILMTPWNIIDQPRFSYRGLLIDTSRHYLPLPVIKNVI 205
Query: 209 DSMSFSKLNVLHWHIIDEQSFPLEVPSYPKLWKGSYSKLERYTVEDARDIVSYARKRGIH 268
DSM+++KLNVLHWHI+D QSFPLE+PSYPKLW G+YS +RYT EDA +IV+YAR+RGIH
Sbjct: 206 DSMTYAKLNVLHWHIVDTQSFPLEIPSYPKLWNGAYSSSQRYTFEDAAEIVNYARRRGIH 265
Query: 269 VMAEIDVPGHAESWGKGYPKLWPSPKCREPLDVTSNFTFEVISGILSDMRKIFPFGLFHL 328
V+AEIDVPGHA SWGKGYP LWPS C+EPLDV+S+FTF+VI GILSD KIF F HL
Sbjct: 266 VLAEIDVPGHALSWGKGYPALWPSKNCQEPLDVSSDFTFKVIDGILSDFSKIFKFKFVHL 325
Query: 329 GGDEVYTGCWNATPHVKQWLHERNMTTKDAYKYFVLKAQEIAINLNWIPVNWEETFNSFK 388
GGDEV T CW+ATP + QWL + M+ K+AY+YFVL+AQ+IA++ + +NWEETF +F
Sbjct: 326 GGDEVNTTCWSATPRIAQWLKKHRMSEKEAYQYFVLRAQKIALSHGYEIINWEETFINFG 385
Query: 389 ENLNPLTVVHNWLGPGVCPKVVEKGFRCIMSNQGVWYLDHLDVPWQDFYTSEPLAGINNT 448
LN TVVHNWL G+ V G RCI+SNQ WYLDH+D PWQ FY +EP I +
Sbjct: 386 SKLNRKTVVHNWLNTGLVENVTASGLRCIVSNQEFWYLDHIDAPWQGFYANEPFQNITDK 445
Query: 449 AQQKLVLGGEVCMWGETADTSDVQQTIWPRAAAAAERMWSQLEAISAQDLETTVLARLHY 508
QQ LVLGGEVCMWGE D SD++QTIWPRAAAAAER+W+ ++ V RL +
Sbjct: 446 KQQSLVLGGEVCMWGEHIDASDIEQTIWPRAAAAAERLWTPYAKLAKN--PNNVTTRLAH 503
Query: 509 FRCLLNHRGIAAAPVTNSYARRPPIGPGSCFIQ 541
FRCLLN RG+AAAP+ R P PGSC Q
Sbjct: 504 FRCLLNQRGVAAAPLVGG-GRVVPFEPGSCLAQ 535
>AT1G05590.1 | chr1:1669871-1671686 FORWARD LENGTH=581
Length = 580
Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 177/554 (31%), Positives = 251/554 (45%), Gaps = 64/554 (11%)
Query: 36 PVYLWPLPRNFT-SGSRTLLVDPDLXXXXXXXXXXXXXXXXXFERYRSLVFSPWAHAARN 94
P+ +WP PR + + + + P+ RS +SP
Sbjct: 30 PINIWPKPRFLSWPQHKAIALSPNFTILAPEHQYLSASVTRYHNLIRSENYSPLISYPVK 89
Query: 95 ASGGYDVGKLTVVVASADEKLELGVDESYTIYVAAAGGVNSIVGGATIEANTIYGAIRGL 154
Y + L V V L GVDESY + + A + A++ +GA+RGL
Sbjct: 90 LMKRYTLRNLVVTVTDFSLPLHHGVDESYKLSIPIGSF------SAHLLAHSAWGAMRGL 143
Query: 155 ETFSQLCVFNYDTKNVEVRHAPWYIEDEPRFAFRGLLLDTSRHFLPVDVIKQVIDSMSFS 214
ETFSQ+ + T YI+D P F RG+LLDTSR++ VD I + I +MS +
Sbjct: 144 ETFSQMI---WGTSPDLCLPVGIYIQDSPLFGHRGVLLDTSRNYYGVDDIMRTIKAMSAN 200
Query: 215 KLNVLHWHIIDEQSFPLEVPSYPKL-WKGSYSKLERYTVEDARDIVSYARKRGIHVMAEI 273
KLNV HWHI D QSFPL +PS P L KGS YT ED IV Y + G+ V+ EI
Sbjct: 201 KLNVFHWHITDSQSFPLVLPSEPSLAAKGSLGPDMVYTPEDVSKIVQYGFEHGVRVLPEI 260
Query: 274 DVPGHAESWGKGYPKL--------WPSPK------CREP----LDVTSNFTFEVISGILS 315
D PGH SWG+ YP++ WP+ K EP L+ S T+EV+ ++
Sbjct: 261 DTPGHTGSWGEAYPEIVTCANMFWWPAGKSWEERLASEPGTGQLNPLSPKTYEVVKNVIQ 320
Query: 316 DMRKIFPFGLFHLGGDEVYTGCWNATPHVKQWLHERNMTTKDAYKYFVLKAQEIAINLNW 375
D+ FP FH GGDEV GCW P + +L ++ KY I ++ N
Sbjct: 321 DIVNQFPESFFHGGGDEVIPGCWKTDPAINSFLSSGGTLSQLLEKYINSTLPYI-VSQNR 379
Query: 376 IPVNWEETFNSFKENLNPL------TVVHNW-LGPGVCPKVVEKGFRCIMSNQGVWYLD- 427
V WE+ + +P T++ W GP ++V G+R I+S+ +YLD
Sbjct: 380 TVVYWEDVLLDAQIKADPSVLPKEHTILQTWNNGPENTKRIVAAGYRVIVSSSEFYYLDC 439
Query: 428 -HLDV----------------------PWQDFYTSEPLAGINNTAQQKLVLGGEVCMWGE 464
H WQ Y + G+ N ++KLVLGGEV +W E
Sbjct: 440 GHGGFLGNDSIYDQKESGGGSWCAPFKTWQSIYNYDIADGLLNEEERKLVLGGEVALWSE 499
Query: 465 TADTSDVQQTIWPRAAAAAERMWSQLEAISAQDLETTVLARLHYFRCLLNHRGIAAAPVT 524
AD++ + +WPRA+A AE +WS + RL+ +R + RGI A P+
Sbjct: 500 QADSTVLDSRLWPRASALAESLWSGNRDERGVKRCGEAVDRLNLWRYRMVKRGIGAEPIQ 559
Query: 525 NSYARRPPIGPGSC 538
+ + PG C
Sbjct: 560 PLWCLK---NPGMC 570
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,750,979
Number of extensions: 500218
Number of successful extensions: 951
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 940
Number of HSP's successfully gapped: 4
Length of query: 541
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 438
Effective length of database: 8,282,721
Effective search space: 3627831798
Effective search space used: 3627831798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)