BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0115700 Os05g0115700|AK070819
(360 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59740.1 | chr5:24070310-24072747 REVERSE LENGTH=345 496 e-141
AT3G46180.1 | chr3:16954671-16956800 REVERSE LENGTH=348 483 e-137
AT2G02810.1 | chr2:801643-803289 FORWARD LENGTH=333 118 5e-27
AT1G14360.1 | chr1:4911362-4913029 REVERSE LENGTH=332 118 5e-27
AT1G12600.1 | chr1:4286414-4288859 REVERSE LENGTH=350 74 1e-13
AT4G23010.3 | chr4:12060318-12062486 REVERSE LENGTH=393 54 1e-07
>AT5G59740.1 | chr5:24070310-24072747 REVERSE LENGTH=345
Length = 344
Score = 496 bits (1277), Expect = e-141, Method: Compositional matrix adjust.
Identities = 232/303 (76%), Positives = 267/303 (88%)
Query: 42 FAVVGIMSTLLIYGLLQEKIMRVPYGAEKEFFRYSLFLVFCNRITTSTVSALVLTASKKS 101
FAV GIMSTL+IYG+LQEKIMRVPYG KEFF++SLFLVFCNR+TTS VSA L ASKK
Sbjct: 21 FAVSGIMSTLVIYGVLQEKIMRVPYGVNKEFFKHSLFLVFCNRLTTSAVSAGALLASKKV 80
Query: 102 LDPVAPLQKYCVVSVSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTIIMRKKYG 161
LDPVAP+ KYC++SV+NILTTTCQYEALKYVSFPVQTLAKCAKMIPVM+WGT+IM+KKY
Sbjct: 81 LDPVAPVYKYCLISVTNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMVWGTLIMQKKYK 140
Query: 162 GKDYFFAVVVTVGCSLFILYPASMDASPFNRGRENTIWGVSLMLGYLGFDGFTSTFQDKL 221
G DY A +VT+GCS+FIL+PA D SP+N+GRENT+WGVSLM GYLGFDGFTSTFQDKL
Sbjct: 141 GFDYLVAFLVTLGCSVFILFPAGDDVSPYNKGRENTVWGVSLMAGYLGFDGFTSTFQDKL 200
Query: 222 FKGYDMEIHNQIFYTTMCSCVLSLSGLILQNQMIPAVDFMFRHPDCFYDVIILSSVATAS 281
FKGY+MEIHNQIFYTT+CSCVLS +GLILQ ++PAVDF+ H DC D+ +LS+VATAS
Sbjct: 201 FKGYNMEIHNQIFYTTLCSCVLSFTGLILQGHLLPAVDFVSLHRDCLLDIALLSTVATAS 260
Query: 282 QFFISYTIRTFGALTFATIMTTRQLVSILLSCVWFVHPLSWMQWVGAAIVFGALYTKSFL 341
QFFISYTIRTFGALTFA IMTTRQL SI+LSC+WF HPLSW Q +G+ IVFG+LY K+ L
Sbjct: 261 QFFISYTIRTFGALTFAAIMTTRQLASIMLSCIWFSHPLSWEQCIGSVIVFGSLYAKNLL 320
Query: 342 RSK 344
+K
Sbjct: 321 NNK 323
>AT3G46180.1 | chr3:16954671-16956800 REVERSE LENGTH=348
Length = 347
Score = 483 bits (1244), Expect = e-137, Method: Compositional matrix adjust.
Identities = 230/306 (75%), Positives = 272/306 (88%)
Query: 42 FAVVGIMSTLLIYGLLQEKIMRVPYGAEKEFFRYSLFLVFCNRITTSTVSALVLTASKKS 101
FA+ GIM TL+IYGLLQEKIMRVPYG +KE+F++SLFLVFCNR+TTS VSA L ASKK
Sbjct: 22 FAISGIMLTLVIYGLLQEKIMRVPYGLKKEYFKHSLFLVFCNRLTTSAVSAAALLASKKV 81
Query: 102 LDPVAPLQKYCVVSVSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTIIMRKKYG 161
LDPVAP+ KYC++SV+NILTTTCQYEALKYVSFPVQTLAKCAKMIPVM+WGT+IM+KKY
Sbjct: 82 LDPVAPVYKYCLISVTNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMVWGTLIMQKKYR 141
Query: 162 GKDYFFAVVVTVGCSLFILYPASMDASPFNRGRENTIWGVSLMLGYLGFDGFTSTFQDKL 221
G DY A +VT+GCS+FIL+PA D SP+N+GRENT+WGVSLM+GYLGFDGFTSTFQDKL
Sbjct: 142 GFDYLVAFLVTLGCSVFILFPAGDDISPYNKGRENTVWGVSLMVGYLGFDGFTSTFQDKL 201
Query: 222 FKGYDMEIHNQIFYTTMCSCVLSLSGLILQNQMIPAVDFMFRHPDCFYDVIILSSVATAS 281
FKGY+MEIHNQIFYTT+CS +LS +GLILQ ++PAVDF+ RH DC +D+ +LS+VATAS
Sbjct: 202 FKGYNMEIHNQIFYTTICSSILSFTGLILQGHLLPAVDFVSRHRDCLFDIALLSTVATAS 261
Query: 282 QFFISYTIRTFGALTFATIMTTRQLVSILLSCVWFVHPLSWMQWVGAAIVFGALYTKSFL 341
QFFISYTIRTFGALTFA IMTTRQL SI+LSC+WF HPLSW Q +G+ IVFG+LY K+F+
Sbjct: 262 QFFISYTIRTFGALTFAAIMTTRQLASIMLSCIWFSHPLSWEQCIGSVIVFGSLYAKTFV 321
Query: 342 RSKPQK 347
+ K +K
Sbjct: 322 KKKSEK 327
>AT2G02810.1 | chr2:801643-803289 FORWARD LENGTH=333
Length = 332
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 146/304 (48%), Gaps = 4/304 (1%)
Query: 44 VVGIMSTLLIYGLLQEKIMRVPYGAEKEFFRYSLFLVFCNRITTSTVSALVLTASKKSLD 103
+ GI S + G+LQE + +G +++ F + FL + S +++ + +
Sbjct: 18 ISGIWSAYIYQGVLQETLSTKRFGPDEKRFEHLAFLNLAQSVVCLIWSYIMIKLWSNAGN 77
Query: 104 PVAPLQKYCVVSVSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTIIMRKKYGGK 163
AP Y ++N + EALKY+S+P Q LAK +KMIPVM+ GT++ +Y
Sbjct: 78 GGAPWWTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTFP 137
Query: 164 DYFFAVVVTVGCSLFILYPASMDASPFNRGRENTIWGVSLMLGYLGFDGFTSTFQDKLFK 223
+Y +V G S+F L S + N G +L L FDGFT+ QD +
Sbjct: 138 EYMCTFLVAGGVSIFALLKTS-SKTISKLAHPNAPLGYALCSLNLAFDGFTNATQDSIAS 196
Query: 224 GY-DMEIHNQIFYTTMCSCVLSLSGLILQNQMI--PAVDFMFRHPDCFYDVIILSSVATA 280
Y E + + + + ++ + Q I A+ F HP+ +D++
Sbjct: 197 RYPKTEAWDIMLGMNLWGTIYNMIYMFGLPQGIGFKAIQFCKLHPEAAWDILKYCICGAV 256
Query: 281 SQFFISYTIRTFGALTFATIMTTRQLVSILLSCVWFVHPLSWMQWVGAAIVFGALYTKSF 340
Q FI TI FG+L TI TTR+ VSI++S V +PLS QW ++VFG L + +
Sbjct: 257 GQNFIFMTISNFGSLANTTITTTRKFVSIVVSSVMSGNPLSLKQWGCVSMVFGGLAYQIY 316
Query: 341 LRSK 344
L+ K
Sbjct: 317 LKWK 320
>AT1G14360.1 | chr1:4911362-4913029 REVERSE LENGTH=332
Length = 331
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 141/306 (46%), Gaps = 8/306 (2%)
Query: 42 FAVVGIMSTLLIYGLLQEKIMRVPYGAEKEFFRYSLFLVFCNRITTSTVSALVLTASKKS 101
F V GI + + G+LQE + +G + + F + FL + S +++
Sbjct: 16 FCVAGIWAAYIYQGILQETLSTKKFGEDGKRFEHLAFLNLAQNVICLVWSYIMIKLWSNG 75
Query: 102 LDPVAPLQKYCVVSVSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTIIMRKKYG 161
AP Y ++N + EALKY+S+P Q LAK +KMIPVM+ G+++ +Y
Sbjct: 76 GSGGAPWWTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGSLVYGIRYT 135
Query: 162 GKDYFFAVVVTVGCSLFILYPASMDASPFNRGRENTIWGVSLMLGYLGFDGFTSTFQDKL 221
+Y +V G S+F L S + N G L L FDGFT+ QD +
Sbjct: 136 LPEYLCTFLVAGGVSMFALLKTS-SKTISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSI 194
Query: 222 FKGYDMEIHNQI-----FYTTMCSCVLSLSGLILQNQMIPAVDFMFRHPDCFYDVIILSS 276
Y I + T+ + V + AV F +HP+ +D+++
Sbjct: 195 TARYPKTNAWDIMLGMNLWGTIYNMVYMFG--LPHGSGFEAVQFCKQHPEAAWDILMYCL 252
Query: 277 VATASQFFISYTIRTFGALTFATIMTTRQLVSILLSCVWFVHPLSWMQWVGAAIVFGALY 336
Q FI TI FG+L TI TTR+ VSI++S V +PLS QW ++VFG L
Sbjct: 253 CGAVGQNFIFLTISRFGSLANTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVSMVFGGLS 312
Query: 337 TKSFLR 342
+ +L+
Sbjct: 313 YQIYLK 318
>AT1G12600.1 | chr1:4286414-4288859 REVERSE LENGTH=350
Length = 349
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 124/262 (47%), Gaps = 18/262 (6%)
Query: 92 ALVLTASKKSLDPVAPLQKYCVVSVSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIW 151
AL+ ++ V P + Y +S + + +L Y+++P Q + K K++PVM+
Sbjct: 69 ALIYMYGFRTKQMVNPWKTYVKLSGVLMGSHGLTKGSLAYLNYPAQIMFKSTKVLPVMVM 128
Query: 152 GTII--MRKKYGGKDYFFAVVVTVGCSLFILYPASMDASPFNRGRENTIWGVSLMLGYLG 209
G I +R+KY +Y A+++ +G LF L A SP +I GV ++ G L
Sbjct: 129 GAFIPGLRRKYPVHEYISAMLLVIGLILFTL--ADAHTSP-----NFSIIGVMMISGALI 181
Query: 210 FDGFTSTFQDKLF----KGYDMEIHNQIFYTTMCSCVLSLSGLILQNQMIPAVDFMFRHP 265
D F Q+ +F + ME+ +F +T+ L+ +IL ++ A + +HP
Sbjct: 182 MDAFLGNLQEAIFTMNPETTQMEM---LFCSTVVGLPFLLAPMILTGELFTAWNSCAQHP 238
Query: 266 DCFYDVIILSSVAT-ASQFFISYTIRTFGALTFATIMTTRQLVSILLSCVWFVHPLSWMQ 324
Y V++ ++AT Q + I FGA T A I T R+ V++LLS + F PL+
Sbjct: 239 YV-YGVLVFEAMATFIGQVSVLSLIALFGAATTAMITTARKAVTLLLSYLIFTKPLTEQH 297
Query: 325 WVGAAIVFGALYTKSFLRSKPQ 346
G ++F + K P
Sbjct: 298 GTGLLLIFMGIILKMVPDPNPN 319
>AT4G23010.3 | chr4:12060318-12062486 REVERSE LENGTH=393
Length = 392
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 26/171 (15%)
Query: 77 LFLVFCNRITTSTVSALVLTASKKSLDPVAPLQKYCVVSVSNILTTTCQYEALKYVSFPV 136
LFL++ TT + V P++ Y +S + + +L Y+++P
Sbjct: 65 LFLIYLQGFTTKHI--------------VNPMRTYVKLSAVLMGSHGLTKGSLAYLNYPA 110
Query: 137 QTLAKCAKMIPVMIWGTII--MRKKYGGKDYFFAVVVTVGCSLFILYPASMDASPFNRGR 194
Q + K K++PVMI G I +R+KY +Y A ++ +G LF L A M SP
Sbjct: 111 QIMFKSTKVLPVMIMGAFIPGLRRKYPVHEYISAFLLVLGLILFTLADAQM--SP----- 163
Query: 195 ENTIWGVSLMLGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTMCSCVLSL 245
++ G+ ++ G L D F Q+ +F ++ + CS V+ L
Sbjct: 164 NFSMIGIMMITGALIMDAFLGNLQEAIFTMNPETTQMEMLF---CSTVVGL 211
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.140 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,613,849
Number of extensions: 253055
Number of successful extensions: 640
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 637
Number of HSP's successfully gapped: 6
Length of query: 360
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,364,969
Effective search space: 2174891940
Effective search space used: 2174891940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 112 (47.8 bits)