BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0114700 Os05g0114700|AK111634
(93 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G46130.1 | chr3:16945433-16946376 FORWARD LENGTH=257 64 2e-11
AT5G59780.3 | chr5:24082425-24083350 REVERSE LENGTH=236 63 3e-11
AT3G53200.1 | chr3:19718426-19719394 REVERSE LENGTH=239 50 2e-07
AT2G47190.1 | chr2:19376284-19377297 FORWARD LENGTH=274 49 7e-07
AT4G13480.1 | chr4:7836675-7837653 FORWARD LENGTH=262 45 1e-05
>AT3G46130.1 | chr3:16945433-16946376 FORWARD LENGTH=257
Length = 256
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 32/38 (84%)
Query: 56 RKGPWTEQEDVQLVWFVRLFGERRWDFLAKVSGLRGGG 93
RKGPWTEQED+ LV FV LFG+RRWDF+AKVSGL G
Sbjct: 8 RKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTG 45
>AT5G59780.3 | chr5:24082425-24083350 REVERSE LENGTH=236
Length = 235
Score = 62.8 bits (151), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 32/38 (84%)
Query: 56 RKGPWTEQEDVQLVWFVRLFGERRWDFLAKVSGLRGGG 93
RKGPWTEQED+ LV FV LFG+RRWDF+AKVSGL G
Sbjct: 9 RKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTG 46
>AT3G53200.1 | chr3:19718426-19719394 REVERSE LENGTH=239
Length = 238
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 29/39 (74%)
Query: 55 MRKGPWTEQEDVQLVWFVRLFGERRWDFLAKVSGLRGGG 93
+R+GPW E+ED +LV + L GERRWD LA VSGL+ G
Sbjct: 9 LRRGPWLEEEDERLVKVISLLGERRWDSLAIVSGLKRSG 47
>AT2G47190.1 | chr2:19376284-19377297 FORWARD LENGTH=274
Length = 273
Score = 48.5 bits (114), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 55 MRKGPWTEQEDVQLVWFVRLFGERRWDFLAKVSGLRGGG 93
+RKGPWTE+ED LV FV + G+ RW+ +A+ SGL+ G
Sbjct: 20 VRKGPWTEEEDAILVNFVSIHGDARWNHIARSSGLKRTG 58
>AT4G13480.1 | chr4:7836675-7837653 FORWARD LENGTH=262
Length = 261
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 29/38 (76%)
Query: 56 RKGPWTEQEDVQLVWFVRLFGERRWDFLAKVSGLRGGG 93
RKGPWT +ED L+ +VR+ GE RW+ ++K++GL+ G
Sbjct: 7 RKGPWTAEEDRLLIEYVRVHGEGRWNSVSKLAGLKRNG 44
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.142 0.478
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,139,273
Number of extensions: 24596
Number of successful extensions: 218
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 7
Length of query: 93
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 29
Effective length of database: 9,351,945
Effective search space: 271206405
Effective search space used: 271206405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)