BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0110800 Os05g0110800|AK067749
         (163 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59400.2  | chr5:23957756-23959518 FORWARD LENGTH=302          149   9e-37

>AT5G59400.2 | chr5:23957756-23959518 FORWARD LENGTH=302
          Length = 301

 Score =  149 bits (375), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 116/164 (70%), Gaps = 9/164 (5%)

Query: 5   LSSIWMLLLLFGTSAFLVPSLCILSLTFG-DAFGARYLLYGAK---SFDVITRVNDMVLI 60
           L+++W+++ LFG+SA ++P++  + L +G D F +  L+Y ++   S  ++++ N ++L 
Sbjct: 139 LATVWIMIFLFGSSACVLPTIYGVGLVYGGDPFDSG-LVYSSQLSSSVPILSKFNGILLS 197

Query: 61  GLGYLIGYPISSASVGALQGLLTNNLVALKGSCPNCGEQVFAFVKTDNSIKAPHRAECHV 120
            LG   GYPI+S++V  L+GL  N+L ALKG CPNCGE+VFAFV++D S ++ H+A+CHV
Sbjct: 198 VLGPAFGYPIASSAVRVLKGLWRNDLTALKGDCPNCGEEVFAFVRSDQSNRSAHKADCHV 257

Query: 121 CSCPLEYRTKVEKSLSGTR--RTWVYGRVYLVKQGHPRKRKWLK 162
           C C LE+RTKVE   S +R  R WVYGR+YLV +  PR+ +  K
Sbjct: 258 CECTLEFRTKVEVDKSASRLGRKWVYGRIYLVSR--PRRDRRSK 299



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,581,072
Number of extensions: 136143
Number of successful extensions: 464
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 463
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 72
Effective length of database: 8,611,713
Effective search space: 620043336
Effective search space used: 620043336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 107 (45.8 bits)