BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0108800 Os05g0108800|X75670
(137 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G32720.1 | chr2:13877013-13878447 REVERSE LENGTH=135 225 7e-60
AT5G53560.1 | chr5:21759628-21760353 FORWARD LENGTH=135 204 2e-53
AT5G48810.1 | chr5:19789249-19790180 REVERSE LENGTH=141 193 2e-50
AT1G26340.1 | chr1:9113992-9114755 FORWARD LENGTH=136 129 5e-31
AT2G46650.1 | chr2:19151807-19152394 FORWARD LENGTH=133 118 9e-28
AT1G37130.1 | chr1:14158617-14161652 FORWARD LENGTH=918 89 8e-19
AT1G77760.1 | chr1:29236005-29239367 REVERSE LENGTH=918 82 6e-17
AT1G60660.1 | chr1:22342589-22342954 REVERSE LENGTH=122 75 1e-14
AT3G61580.1 | chr3:22786253-22787602 FORWARD LENGTH=450 69 6e-13
AT2G46210.1 | chr2:18977542-18978891 FORWARD LENGTH=450 62 9e-11
AT5G09680.1 | chr5:2999362-3000185 REVERSE LENGTH=212 61 2e-10
>AT2G32720.1 | chr2:13877013-13878447 REVERSE LENGTH=135
Length = 134
Score = 225 bits (573), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 102/132 (77%), Positives = 116/132 (87%)
Query: 3 NDNKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFED 62
D K++TL EV++HN DCW++I GKVYNV+KFLEDHPGGDDVLLSSTGKDATDDFED
Sbjct: 2 GDEAKIFTLSEVSEHNQAHDCWIVINGKVYNVTKFLEDHPGGDDVLLSSTGKDATDDFED 61
Query: 63 VGHSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLAIL 122
VGHS +AR MM++YYVG+ID +TIP + KY PPKQPHYNQDKT EFIIK+LQFLVPLAIL
Sbjct: 62 VGHSESAREMMEQYYVGEIDPTTIPKKVKYTPPKQPHYNQDKTSEFIIKLLQFLVPLAIL 121
Query: 123 GLAVAIRIYTKS 134
GLAV IRIYTKS
Sbjct: 122 GLAVGIRIYTKS 133
>AT5G53560.1 | chr5:21759628-21760353 FORWARD LENGTH=135
Length = 134
Score = 204 bits (518), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/135 (69%), Positives = 116/135 (85%), Gaps = 1/135 (0%)
Query: 1 MSNDNKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDF 60
MS+D +KV + EEV+KHN DCWLII GKVY+V+ F++DHPGGD+VLLSSTGKDAT+DF
Sbjct: 1 MSSD-RKVLSFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDF 59
Query: 61 EDVGHSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLA 120
EDVGHS TAR MMD+Y++G+ID+S++PA YV P+QP YNQDKTPEFIIKILQFLVP+
Sbjct: 60 EDVGHSDTARDMMDKYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEFIIKILQFLVPIL 119
Query: 121 ILGLAVAIRIYTKSE 135
ILGLA+ +R YTK +
Sbjct: 120 ILGLALVVRHYTKKD 134
>AT5G48810.1 | chr5:19789249-19790180 REVERSE LENGTH=141
Length = 140
Score = 193 bits (490), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 89/138 (64%), Positives = 115/138 (83%), Gaps = 3/138 (2%)
Query: 1 MSNDNKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDF 60
M D K V+TL EV++H+S DCW++I GKVY+V+KFL+DHPGGD+V+L+STGKDATDDF
Sbjct: 1 MGGDGK-VFTLSEVSQHSSAKDCWIVIDGKVYDVTKFLDDHPGGDEVILTSTGKDATDDF 59
Query: 61 EDVGHSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPH--YNQDKTPEFIIKILQFLVP 118
EDVGHS+TA+AM+DEYYVGDIDT+T+P + K+VPP QDK+ +F+IK+LQFLVP
Sbjct: 60 EDVGHSSTAKAMLDEYYVGDIDTATVPVKAKFVPPTSTKAVATQDKSSDFVIKLLQFLVP 119
Query: 119 LAILGLAVAIRIYTKSES 136
L ILGLA IR YTK+++
Sbjct: 120 LLILGLAFGIRYYTKTKA 137
>AT1G26340.1 | chr1:9113992-9114755 FORWARD LENGTH=136
Length = 135
Score = 129 bits (323), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 93/129 (72%), Gaps = 10/129 (7%)
Query: 7 KVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHS 66
K+Y++EE A HN +DDCW++I GKVY+VS ++++HPGGDDVLL+ GKDATDDFED GHS
Sbjct: 6 KLYSMEEAATHNKQDDCWVVIDGKVYDVSSYMDEHPGGDDVLLAVAGKDATDDFEDAGHS 65
Query: 67 TTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQ-----FLVPLAI 121
AR +M++Y++G++D S++P P+ Y +D+ + + K+ ++VP++I
Sbjct: 66 KDARELMEKYFIGELDESSLPEI-----PELKIYKKDQPQDSVQKLFDLTKQYWVVPVSI 120
Query: 122 LGLAVAIRI 130
+ ++VA+ +
Sbjct: 121 ITISVAVSV 129
>AT2G46650.1 | chr2:19151807-19152394 FORWARD LENGTH=133
Length = 132
Score = 118 bits (296), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 89/125 (71%), Gaps = 2/125 (1%)
Query: 10 TLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSTTA 69
+ +VAKH K+DCW++I GKVY++S F+++HPGGD+VLL+ TGKDA+ DFEDV HS A
Sbjct: 6 SFHDVAKHKCKNDCWILIHGKVYDISTFMDEHPGGDNVLLAVTGKDASIDFEDVNHSKDA 65
Query: 70 RAMMDEYYVGDIDTSTIPARTKYVPP--KQPHYNQDKTPEFIIKILQFLVPLAILGLAVA 127
+ +M +Y +GD+D ST+P +Y+PP K+ + E K+L +L+PL ILG+A A
Sbjct: 66 KELMKKYCIGDVDQSTVPVTQQYIPPWEKESTAAETTKEESGKKLLIYLIPLLILGVAFA 125
Query: 128 IRIYT 132
+R Y
Sbjct: 126 LRFYN 130
>AT1G37130.1 | chr1:14158617-14161652 FORWARD LENGTH=918
Length = 917
Score = 89.0 bits (219), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 3 NDNKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFED 62
N K+Y++ EV KHNS D CW+I+ G +Y+ ++FL DHPGG D +L + G D T++FE
Sbjct: 539 NTTAKMYSMSEVKKHNSADSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGTDCTEEFEA 598
Query: 63 VGHSTTARAMMDEYYVGDIDTS 84
+ HS A+ M+++Y +G++ T+
Sbjct: 599 I-HSDKAKKMLEDYRIGELITT 619
>AT1G77760.1 | chr1:29236005-29239367 REVERSE LENGTH=918
Length = 917
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 3 NDNKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFED 62
N K+Y++ EV KHN+ D W+I+ G +Y+ ++FL+DHPGG D +L + G D T++FE
Sbjct: 542 NTASKMYSISEVRKHNTADSAWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFEA 601
Query: 63 VGHSTTARAMMDEYYVGDIDTS 84
+ HS A+ ++++Y +G++ T+
Sbjct: 602 I-HSDKAKKLLEDYRIGELITT 622
>AT1G60660.1 | chr1:22342589-22342954 REVERSE LENGTH=122
Length = 121
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 7 KVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHS 66
K Y+ EVA HN ++DCW+II KVY+++ ++E+HPGG D +L G D+TD F H+
Sbjct: 47 KSYSKSEVAVHNKRNDCWIIIKDKVYDITSYVEEHPGG-DAILDHAGDDSTDGFFGPQHA 105
Query: 67 TTARAMMDEYYVGDI 81
T M++++Y+G++
Sbjct: 106 TRVFDMIEDFYIGEL 120
>AT3G61580.1 | chr3:22786253-22787602 FORWARD LENGTH=450
Length = 449
Score = 69.3 bits (168), Expect = 6e-13, Method: Composition-based stats.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 6 KKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGH 65
KK T E++ KHN D W+ I GKVYNVS +++ HPGGD V+L+ G+D TD F H
Sbjct: 7 KKYITNEDLKKHNKSGDLWIAIQGKVYNVSDWIKTHPGGDTVILNLVGQDVTDAFIAF-H 65
Query: 66 STTARAMMDEYYVG 79
TA +D + G
Sbjct: 66 PGTAWHHLDHLFTG 79
>AT2G46210.1 | chr2:18977542-18978891 FORWARD LENGTH=450
Length = 449
Score = 62.0 bits (149), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 1 MSNDNKKVY-TLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDD 59
M++ KK Y T E++ KHN D W+ I GKVY+VS +++ HPGG+ +L+ G+D TD
Sbjct: 1 MADQTKKRYVTSEDLKKHNKPGDLWISIQGKVYDVSDWVKSHPGGEAAILNLAGQDVTDA 60
Query: 60 F 60
F
Sbjct: 61 F 61
>AT5G09680.1 | chr5:2999362-3000185 REVERSE LENGTH=212
Length = 211
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%)
Query: 5 NKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVG 64
NK++ ++EV KH + D W ++ G+VYN+S ++ HPGG D+L+ + G+D T F
Sbjct: 125 NKRLIPMDEVKKHRTGDSMWTVLKGRVYNISPYMNFHPGGVDMLMKAVGRDGTLLFNKYH 184
Query: 65 HSTTARAMMDEYYVGDIDTSTI 86
++++ VG +D + +
Sbjct: 185 AWVNVDILLEKCLVGVLDDTKV 206
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,241,411
Number of extensions: 139330
Number of successful extensions: 244
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 11
Length of query: 137
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 49
Effective length of database: 8,693,961
Effective search space: 426004089
Effective search space used: 426004089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 106 (45.4 bits)