BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0103400 Os05g0103400|AK066339
(69 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G08391.1 | chr5:2699357-2699566 FORWARD LENGTH=70 95 6e-21
AT3G48660.1 | chr3:18029659-18030133 FORWARD LENGTH=90 94 2e-20
AT5G63500.1 | chr5:25423460-25423669 FORWARD LENGTH=70 89 4e-19
AT3G27027.1 | chr3:9971921-9972130 FORWARD LENGTH=70 86 5e-18
AT3G27030.1 | chr3:9972508-9974225 REVERSE LENGTH=143 85 9e-18
AT5G40970.1 | chr5:16414081-16414290 FORWARD LENGTH=70 81 1e-16
AT5G40980.1 | chr5:16414877-16415086 REVERSE LENGTH=70 80 2e-16
AT3G01950.1 | chr3:324026-324238 FORWARD LENGTH=71 75 6e-15
AT5G14110.1 | chr5:4553964-4554176 REVERSE LENGTH=71 73 3e-14
AT3G01940.1 | chr3:322841-323053 REVERSE LENGTH=71 70 3e-13
AT5G50660.1 | chr5:20612575-20612778 FORWARD LENGTH=68 65 6e-12
AT5G50560.1 | chr5:20579233-20579436 FORWARD LENGTH=68 65 6e-12
AT5G40960.1 | chr5:16412745-16412951 REVERSE LENGTH=69 54 2e-08
>AT5G08391.1 | chr5:2699357-2699566 FORWARD LENGTH=70
Length = 69
Score = 95.1 bits (235), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 57/66 (86%)
Query: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI 60
MSDWGPV++ V+LFV+L+PGLL QLPGR +VEFGN TSA+S++VHS++YF+L+ +F++
Sbjct: 1 MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60
Query: 61 VIGVHI 66
+ +HI
Sbjct: 61 ALKIHI 66
>AT3G48660.1 | chr3:18029659-18030133 FORWARD LENGTH=90
Length = 89
Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI 60
M+DWGPVV+AV+LFVLL+PGLL Q+P R VEFGN+ TS SI+VH+II+F LIT+F I
Sbjct: 1 MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60
Query: 61 VIGVHITTD 69
I +HI T
Sbjct: 61 AIRLHIYTG 69
>AT5G63500.1 | chr5:25423460-25423669 FORWARD LENGTH=70
Length = 69
Score = 89.4 bits (220), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 54/69 (78%)
Query: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI 60
M+DWGPV+IAV+LFV+LSPGLL Q+P VEFGN+ TS SI+VH+II+F LIT+F I
Sbjct: 1 MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60
Query: 61 VIGVHITTD 69
I VHI +
Sbjct: 61 AINVHIYSG 69
>AT3G27027.1 | chr3:9971921-9972130 FORWARD LENGTH=70
Length = 69
Score = 85.5 bits (210), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 52/65 (80%)
Query: 2 SDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVIV 61
+DWGPV++AV LF+LLSPGLL QLP R VEFGN+ TS ++I+VH+ IYF ++T+ VI
Sbjct: 3 TDWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILVIA 62
Query: 62 IGVHI 66
I +HI
Sbjct: 63 IQIHI 67
>AT3G27030.1 | chr3:9972508-9974225 REVERSE LENGTH=143
Length = 142
Score = 84.7 bits (208), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 51/68 (75%)
Query: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI 60
M DWGPV +AV LFVLL+PGLLIQ+PGR VEFG TS +S++VH++IYF L+ + ++
Sbjct: 1 MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60
Query: 61 VIGVHITT 68
+ +HI
Sbjct: 61 ALQIHICN 68
Score = 76.6 bits (187), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 51/68 (75%)
Query: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI 60
M+DW PV++ VVLFV+LSPGLL LPG + V+FG L T+ +I VH++I+FA+ T+ ++
Sbjct: 74 MADWAPVLVGVVLFVILSPGLLFSLPGNNRTVDFGGLKTNGKAIAVHTLIFFAIYTILIL 133
Query: 61 VIGVHITT 68
+ +HI T
Sbjct: 134 ALNLHIYT 141
>AT5G40970.1 | chr5:16414081-16414290 FORWARD LENGTH=70
Length = 69
Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 52/68 (76%)
Query: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI 60
M+DW PV++ VVLFV+LSPGLL LPG HH ++FG + T+ +I VH++I+FA T+ ++
Sbjct: 1 MADWAPVLVGVVLFVILSPGLLFSLPGHHHTLQFGGMKTNGKAIAVHTLIFFAAYTILIL 60
Query: 61 VIGVHITT 68
+ +HITT
Sbjct: 61 AVNLHITT 68
>AT5G40980.1 | chr5:16414877-16415086 REVERSE LENGTH=70
Length = 69
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 46/55 (83%)
Query: 2 SDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALIT 56
+DWGPV++AV LF+LLSPGLL QLP R +EFGN+ TS +SI+VH+IIYF ++T
Sbjct: 3 ADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILT 57
>AT3G01950.1 | chr3:324026-324238 FORWARD LENGTH=71
Length = 70
Score = 75.5 bits (184), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 50/64 (78%)
Query: 3 DWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVIVI 62
DWGPV+++V+ F++LSPG+L QLPG+ VEFG TS SIV+H++++FA IT+ +I +
Sbjct: 4 DWGPVLMSVIFFIVLSPGVLFQLPGKSKAVEFGGFQTSGPSIVIHTLLFFAFITISLIAL 63
Query: 63 GVHI 66
+HI
Sbjct: 64 HIHI 67
>AT5G14110.1 | chr5:4553964-4554176 REVERSE LENGTH=71
Length = 70
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 50/64 (78%)
Query: 3 DWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVIVI 62
+WGPV+++V LF++L+PG+L QLPG+ VEFG TS +IV+H++I+FA IT+ +I +
Sbjct: 4 NWGPVLMSVFLFIVLTPGVLFQLPGKTKVVEFGGFQTSGAAIVIHTLIFFACITVSIIAL 63
Query: 63 GVHI 66
+HI
Sbjct: 64 HIHI 67
>AT3G01940.1 | chr3:322841-323053 REVERSE LENGTH=71
Length = 70
Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 53/65 (81%)
Query: 2 SDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVIV 61
+DWGPV +AVVLFV+LSPGLL QLP R +E GN+ TS +SI+VH+I++FA+IT+ VI
Sbjct: 4 ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63
Query: 62 IGVHI 66
I +HI
Sbjct: 64 IQIHI 68
>AT5G50660.1 | chr5:20612575-20612778 FORWARD LENGTH=68
Length = 67
Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 51/62 (82%)
Query: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI 60
M++W PVV+A VLFV+LSPGLL Q+PG ++FV+FG + TS SI++H+ +YF L+T+F +
Sbjct: 1 MTEWLPVVVATVLFVVLSPGLLFQVPGNNNFVDFGKMETSGYSILLHAFLYFGLVTVFTV 60
Query: 61 VI 62
VI
Sbjct: 61 VI 62
>AT5G50560.1 | chr5:20579233-20579436 FORWARD LENGTH=68
Length = 67
Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 51/62 (82%)
Query: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI 60
M++W PVV+A VLFV+LSPGLL Q+PG ++FV+FG + TS SI++H+ +YF L+T+F +
Sbjct: 1 MTEWLPVVVATVLFVVLSPGLLFQVPGNNNFVDFGKMETSGYSILLHAFLYFGLVTVFTV 60
Query: 61 VI 62
VI
Sbjct: 61 VI 62
>AT5G40960.1 | chr5:16412745-16412951 REVERSE LENGTH=69
Length = 68
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 1 MSDWGPVVIAVVLFVLLSPGLLIQLPGRHHFVEFGNLHTSAMSIVVHSIIYFALITLFVI 60
M DW +IA LF LSPGL++Q PG+ V F N+ T+ SI VH+++Y + LF++
Sbjct: 1 MHDWAAPLIASALFAFLSPGLILQFPGKESPVGFMNMKTTVASIFVHTVLYGLFLILFLV 60
Query: 61 VIGVHI 66
V+ VH+
Sbjct: 61 VLNVHV 66
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.334 0.148 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,339,296
Number of extensions: 39626
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 14
Length of query: 69
Length of database: 11,106,569
Length adjustment: 41
Effective length of query: 28
Effective length of database: 9,982,513
Effective search space: 279510364
Effective search space used: 279510364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 104 (44.7 bits)