BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0691200 Os04g0691200|003-129-G03
         (264 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31160.1  | chr4:15145936-15152939 FORWARD LENGTH=1884         238   3e-63

>AT4G31160.1 | chr4:15145936-15152939 FORWARD LENGTH=1884
          Length = 1883

 Score =  238 bits (606), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/223 (51%), Positives = 165/223 (73%), Gaps = 2/223 (0%)

Query: 2    RMGSREIRRQFSGIQIPRRDRQFIYSRFKLCRVCRDESSLLTCMTFLGDASRVAAGNHTG 61
            R+G+RE++  +SG+   RRDRQF++SRFK  R  RDE++L TC+  LG  + +A G+H G
Sbjct: 1429 RLGTRELQSFYSGVHGNRRDRQFVFSRFKSWRSFRDETALFTCIALLGGTNHIAVGSHAG 1488

Query: 62   ELRVFDCNTANILETQTCHQQLVTIVESASSGGNELILTSSLNEVKVWDAFSVSGGPLHT 121
            E+++F+ ++ ++LE+ + HQ  VT+V+   S   +L+L+SS ++V++WDA S++GGP H+
Sbjct: 1489 EIKIFEASSGSMLESVSGHQAPVTLVQPYVSRDTQLLLSSSSSDVQLWDASSITGGPRHS 1548

Query: 122  FEGCKAARFSHSGTSFAALSTDTTRREVLLYDVQTYNLDLRLPDNSGYSGGRGYVQPIIH 181
            F+GCKAA+FS+SG  FAALS + +R++VLLYDVQT +   +L D    S    Y   ++H
Sbjct: 1549 FDGCKAAKFSNSGLQFAALSCEASRKDVLLYDVQTCSPCQKLTDTVTSSRSNPY--SLVH 1606

Query: 182  FSPSDTMLLWNGVLWDRRSPNPVHQFDQFTDYGGGGFHPAGNE 224
            FSP DT++LWNGVLWDRR P  V +FDQFTDYGGGGFHP+ NE
Sbjct: 1607 FSPCDTLILWNGVLWDRRIPEKVRRFDQFTDYGGGGFHPSRNE 1649



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,771,627
Number of extensions: 237000
Number of successful extensions: 481
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 167
Effective length of database: 8,447,217
Effective search space: 1410685239
Effective search space used: 1410685239
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)