BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0689500 Os04g0689500|AK060983
(348 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G45688.1 | chr1:17191502-17192870 FORWARD LENGTH=343 212 3e-55
AT5G42860.1 | chr5:17183339-17184857 REVERSE LENGTH=321 204 6e-53
AT4G35170.1 | chr4:16736839-16738186 FORWARD LENGTH=300 153 1e-37
AT2G41990.1 | chr2:17527396-17528527 FORWARD LENGTH=298 125 2e-29
AT3G24600.1 | chr3:8972195-8974867 REVERSE LENGTH=507 118 5e-27
AT3G08490.1 | chr3:2574105-2575125 REVERSE LENGTH=272 65 6e-11
>AT1G45688.1 | chr1:17191502-17192870 FORWARD LENGTH=343
Length = 342
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 137/338 (40%), Positives = 164/338 (48%), Gaps = 35/338 (10%)
Query: 38 TDSEVTSLAXXXXXXXXXXXXXXXVYYVQSPSRDSHDGEKTATSVHSTPALSPMGXXXXX 97
TDSEVTSLA VYYVQSPSRDSHDGEKTATS HSTP LSPMG
Sbjct: 5 TDSEVTSLAASSPARSPRRP----VYYVQSPSRDSHDGEKTATSFHSTPVLSPMGSPPHS 60
Query: 98 XXXXXXXXXXXGHPXXXXXXXXXXXXXAP----------AGKGWQEIGVIXXXXXXXXXX 147
P K W+E VI
Sbjct: 61 HSSMGRHSRESSSSRFSGSLKPGSRKVNPNDGSKRKGHGGEKQWKECAVIEEEGLLDDGD 120
Query: 148 XXXXIPKRCKYXXXXXXXXXXXXXXXXXXXWGASRSQKPQIVIKSITFDNFIIQAGTDAS 207
+P+RC Y +GA++ KP+I +KSITF+ IQAG DA
Sbjct: 121 RDGGVPRRC-YVLAFIVGFFILFGFFSLILYGAAKPMKPKITVKSITFETLKIQAGQDAG 179
Query: 208 LVPTDMATTNSTVKLTYRNTGTFFGIHVTADPFTLSYSQLTLASGDLNKFYQARSSRRTV 267
V TDM T N+T+++ YRNTGTFFG+HVT+ P LS+SQ+ + SG + KFYQ R S RTV
Sbjct: 180 GVGTDMITMNATLRMLYRNTGTFFGVHVTSTPIDLSFSQIKIGSGSVKKFYQGRKSERTV 239
Query: 268 SVGVMGNKVPLYGGGPT--------------------LTAGKGSGSMAPVPMILRTTVHS 307
V V+G K+PLYG G T + APVPM L V S
Sbjct: 240 LVHVIGEKIPLYGSGSTLLPPAPPAPLPKPKKKKGAPVPIPDPPAPPAPVPMTLSFVVRS 299
Query: 308 RAYVLGALVKPKFTRAIECKVLMNPAKLNKPISLDKSC 345
RAYVLG LV+PKF + IEC + LNK I + K+C
Sbjct: 300 RAYVLGKLVQPKFYKKIECDINFEHKNLNKHIVITKNC 337
>AT5G42860.1 | chr5:17183339-17184857 REVERSE LENGTH=321
Length = 320
Score = 204 bits (519), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 132/333 (39%), Positives = 166/333 (49%), Gaps = 47/333 (14%)
Query: 38 TDSEVTSLAXXXXXXXXXXXXXXXVYYVQSPSRDSHDGEKTATSVHSTPAL-SPMGXXXX 96
TDSEVTSL+ Y+VQSPSRDSHDGEKTATS HSTP L SPMG
Sbjct: 5 TDSEVTSLSASSPTRSPRRP----AYFVQSPSRDSHDGEKTATSFHSTPVLTSPMGSPPH 60
Query: 97 XXX-----XXXXXXXXXGHPXXXXXXXXXXXXXAPAGKGWQEIGVIXXXXXXXXXXXXXX 151
GH G QE
Sbjct: 61 SHSSSSRFSKINGSKRKGHAGEKQFAMIEEEGLLDDGDREQE-----------------A 103
Query: 152 IPKRCKYXXXXXXXXXXXXXXXXXXXWGASRSQKPQIVIKSITFDNFIIQAGTDASLVPT 211
+P+RC Y + A++ QKP+I +KSITF+ +QAG DA + T
Sbjct: 104 LPRRC-YVLAFIVGFSLLFAFFSLILYAAAKPQKPKISVKSITFEQLKVQAGQDAGGIGT 162
Query: 212 DMATTNSTVKLTYRNTGTFFGIHVTADPFTLSYSQLTLASGDLNKFYQARSSRRTVSVGV 271
DM T N+T+++ YRNTGTFFG+HVT+ P LS+SQ+T+ SG + KFYQ+R S+RTV V V
Sbjct: 163 DMITMNATLRMLYRNTGTFFGVHVTSSPIDLSFSQITIGSGSIKKFYQSRKSQRTVVVNV 222
Query: 272 MGNKVPLYGGGPTLTAG-------------------KGSGSMAPVPMILRTTVHSRAYVL 312
+G+K+PLYG G TL + APVPM L TV SRAYVL
Sbjct: 223 LGDKIPLYGSGSTLVPPPPPAPIPKPKKKKGPIVIVEPPAPPAPVPMRLNFTVRSRAYVL 282
Query: 313 GALVKPKFTRAIECKVLMNPAKLNKPISLDKSC 345
G LV+PKF + I C + KL+K I + +C
Sbjct: 283 GKLVQPKFYKRIVCLINFEHKKLSKHIPITNNC 315
>AT4G35170.1 | chr4:16736839-16738186 FORWARD LENGTH=300
Length = 299
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 100/168 (59%)
Query: 178 WGASRSQKPQIVIKSITFDNFIIQAGTDASLVPTDMATTNSTVKLTYRNTGTFFGIHVTA 237
WG S+S P +K + +N +Q+G D S V TDM T NSTV++ YRN TFF +HVT+
Sbjct: 129 WGVSKSFAPIATLKEMVLENLNVQSGNDQSGVLTDMLTLNSTVRILYRNPATFFTVHVTS 188
Query: 238 DPFTLSYSQLTLASGDLNKFYQARSSRRTVSVGVMGNKVPLYGGGPTLTAGKGSGSMAPV 297
P LSYSQL LASG + +F Q R S R + V G+++PLYGG P L + +
Sbjct: 189 APLQLSYSQLILASGQMGEFSQRRKSERIIETKVFGDQIPLYGGVPALFGQRAEPDQVVL 248
Query: 298 PMILRTTVHSRAYVLGALVKPKFTRAIECKVLMNPAKLNKPISLDKSC 345
P+ L T+ +RAYVLG LVK F I+C + KL K + L KSC
Sbjct: 249 PLNLTFTLRARAYVLGRLVKTTFHSNIKCSITFYGDKLGKTLDLSKSC 296
>AT2G41990.1 | chr2:17527396-17528527 FORWARD LENGTH=298
Length = 297
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 103/169 (60%), Gaps = 6/169 (3%)
Query: 178 WGASRSQKPQIVIKSITFDNFIIQAGTDASLVPTDMATTNSTVKLTYRNTGTFFGIHVTA 237
WGAS+S P++ +K + + +QAG D S VPTDM + NSTV++ YRN TFF +HVTA
Sbjct: 134 WGASKSYPPKVTVKGMLVRDLNLQAGNDLSGVPTDMLSLNSTVRIYYRNPSTFFAVHVTA 193
Query: 238 DPFTLSYSQLTLASGDLNKFYQARSSRRTVSVGVMGNKVPLYGGGPTLTAGKGSGSMAPV 297
P L YS L L+SG++NKF R+ V V G+++PLYGG ++ + S+
Sbjct: 194 SPLLLHYSNLLLSSGEMNKFTVGRNGETNVVTVVQGHQIPLYGG---VSFHLDTLSL--- 247
Query: 298 PMILRTTVHSRAYVLGALVKPKFTRAIECKVLMNPAKLNKPISLDKSCI 346
P+ L +HS+AY+LG LV KF I C ++ L K ISL +SCI
Sbjct: 248 PLNLTIVLHSKAYILGRLVTSKFYTRIICSFTLDANHLPKSISLLRSCI 296
>AT3G24600.1 | chr3:8972195-8974867 REVERSE LENGTH=507
Length = 506
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 94/169 (55%), Gaps = 4/169 (2%)
Query: 178 WGASRSQKPQIVIKSITFDNFIIQAGTDASLVPTDMATTNSTVKLTYRNTGTFFGIHVTA 237
WGAS P + +KS+ +F G D + V T + + NS+VK+T + +FGIHV++
Sbjct: 336 WGASHPFSPIVSVKSVDIHSFYYGEGIDRTGVATKILSFNSSVKVTIDSPAPYFGIHVSS 395
Query: 238 DPFTLSYSQLTLASGDLNKFYQARSSRRTVSVGVMGNKVPLYGGGPTLTAGKGSGSMAPV 297
F L++S LTLA+G L +YQ R S+ V + G +VPLYG GP L A G V
Sbjct: 396 STFKLTFSALTLATGQLKSYYQPRKSKHISIVKLTGAEVPLYGAGPHLAASDKKGK---V 452
Query: 298 PMILRTTVHSRAYVLGALVKPKFTRAIECKVLMNPAKLNKPISL-DKSC 345
P+ L + SR +LG LVK K + C ++ +K +KPI K+C
Sbjct: 453 PVKLEFEIRSRGNLLGKLVKSKHENHVSCSFFISSSKTSKPIEFTHKTC 501
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 178 WGASRSQKPQIVIKSITFDNFIIQAGTDASLVPTDMATTNSTVKLTYRNTGTFFGIHVTA 237
+GAS+S P + IK + +F G+D + VPT + +V +T N T FGIHV++
Sbjct: 131 FGASQSSPPIVYIKGVNVRSFYYGEGSDNTGVPTKIMNVKCSVVITTHNPSTLFGIHVSS 190
Query: 238 DPFTLSYS-QLTLASGDLNKFYQARSSRRTVSVGVMGNKVPLYGGGPTLTAGKGSGSM 294
+L YS Q TLA+ L ++Q + S T + ++G+KVPLYG G L A SG +
Sbjct: 191 TAVSLIYSRQFTLANARLKSYHQPKQSNHTSRINLIGSKVPLYGAGAELVASDNSGGV 248
>AT3G08490.1 | chr3:2574105-2575125 REVERSE LENGTH=272
Length = 271
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 2/151 (1%)
Query: 180 ASRSQKPQIVIKSITFDNFIIQAGTDASLVPTDMATTNSTVKLTYRNTGTFFGIHVTADP 239
A++ P I + F+ F+++ G D+ V T T N + KL N FG+H+
Sbjct: 103 ATQPPHPNISFRIGRFNQFMLEEGVDSHGVSTKFLTFNCSTKLIIDNKSNVFGLHIHPPS 162
Query: 240 FTLSYSQLTLASGDLNKFYQARSSRRTVSVGVMGNKVPLYGGGPTLTAGKGSGSMAPVPM 299
+ L A K Y T + + +YG G + S A +P+
Sbjct: 163 IKFFFGPLNFAKAQGPKLYGLSHESTTFQLYIATTNRAMYGAGTEM--NDMLLSRAGLPL 220
Query: 300 ILRTTVHSRAYVLGALVKPKFTRAIECKVLM 330
ILRT++ S V+ ++ PK+ +EC +L+
Sbjct: 221 ILRTSIISDYRVVWNIINPKYHHKVECLLLL 251
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.131 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,186,044
Number of extensions: 168659
Number of successful extensions: 354
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 9
Length of query: 348
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 249
Effective length of database: 8,392,385
Effective search space: 2089703865
Effective search space used: 2089703865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)