BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0681900 Os04g0681900|AK105775
(336 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G53470.1 | chr5:21710497-21712391 FORWARD LENGTH=339 303 1e-82
AT4G27780.1 | chr4:13847774-13849629 FORWARD LENGTH=355 265 2e-71
AT4G24230.6 | chr4:12567122-12568754 REVERSE LENGTH=367 83 2e-16
AT3G05420.2 | chr3:1561880-1567047 FORWARD LENGTH=670 69 3e-12
AT2G03430.1 | chr2:1036192-1037536 REVERSE LENGTH=241 66 3e-11
AT5G27630.1 | chr5:9776101-9780780 FORWARD LENGTH=649 66 3e-11
AT1G31812.1 | chr1:11411132-11412099 REVERSE LENGTH=93 57 1e-08
AT4G35450.5 | chr4:16839862-16841759 FORWARD LENGTH=351 53 3e-07
AT5G40160.1 | chr5:16062726-16064301 REVERSE LENGTH=316 52 6e-07
AT5G66055.1 | chr5:26417425-26419234 REVERSE LENGTH=436 51 7e-07
AT3G58760.1 | chr3:21728756-21731740 FORWARD LENGTH=472 50 1e-06
AT2G17390.1 | chr2:7555870-7557743 FORWARD LENGTH=345 49 3e-06
AT2G14255.1 | chr2:6036974-6040892 FORWARD LENGTH=537 48 9e-06
>AT5G53470.1 | chr5:21710497-21712391 FORWARD LENGTH=339
Length = 338
Score = 303 bits (775), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 162/337 (48%), Positives = 199/337 (59%), Gaps = 14/337 (4%)
Query: 3 GDWQELAQAAVIGLLFAFLVAKLISTVIAFKEDNLRITRXXXXXXXXXXXXXXXXXX--- 59
DW +LAQ+ + GL+FA+L+AKLIS ++AFK++NL +TR
Sbjct: 2 ADWYQLAQSIIFGLIFAYLLAKLISILLAFKDENLSLTRNHTTQSEYENLRKVETLTGIS 61
Query: 60 --XXXXXXXXXXXXXXXXXXXXXXXXXVESTELDEDXXXXXXXXXXXXXXGTS--VPEQA 115
VESTELDE S V +
Sbjct: 62 GETDSLIAEQGSLRGDEDESDDDDWEGVESTELDEAFSAATAFVAAAASDRLSQKVSNEL 121
Query: 116 QLQLYGLYKIATEGPCTAPQPSALKLKARAKWNAWHKLGAMPTEEAMQKYITVVDELFPN 175
QLQLYGLYKIATEGPCTAPQPSALK+ ARAKW AW KLGAMP EEAM+KYI +V +L+P
Sbjct: 122 QLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIDLVTQLYPA 181
Query: 176 WSMGSSTKRKDEDTTVSASSSKGPMGPVFSSLMYEEEDQGNDSELGDIHVSAREGAIDDI 235
W G S +R + + GPMGPVFSSL+YEEE N+ ++ IH AREG ++++
Sbjct: 182 WVEGGSKRRN------RSGEAAGPMGPVFSSLVYEEESD-NELKIDAIHAFAREGEVENL 234
Query: 236 AKHLAAGVEVNMRDSEGRTPLHWAVDRGHLNSVEILXXXXXXXXXXXXEGQTALHYAVLC 295
K + G+ VN RDSEGRTPLHWA+DRGHLN E L EGQT+LHYAV+C
Sbjct: 235 LKCIENGIPVNARDSEGRTPLHWAIDRGHLNVAEALVDKNADVNAKDNEGQTSLHYAVVC 294
Query: 296 EREDIAELLVKHHADVQIKDEDGNTVRELCPSSWSFM 332
ERE +AE LVK AD IKDEDGN+ +LC S WS+M
Sbjct: 295 EREALAEFLVKQKADTTIKDEDGNSPLDLCESEWSWM 331
>AT4G27780.1 | chr4:13847774-13849629 FORWARD LENGTH=355
Length = 354
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 136/252 (53%), Positives = 170/252 (67%), Gaps = 8/252 (3%)
Query: 85 VESTELDEDXXXXXXXXXXXXXXGTS--VPEQAQLQLYGLYKIATEGPCTAPQPSALKLK 142
VESTELDE S VP Q QLYGLYKIATEGPCTAPQPSALK+
Sbjct: 99 VESTELDEAFSAATLFVTTAAADRLSQKVPSDVQQQLYGLYKIATEGPCTAPQPSALKMT 158
Query: 143 ARAKWNAWHKLGAMPTEEAMQKYITVVDELFPNWSMGS--STKRKDEDTTVSASSSKGPM 200
ARAKW AW KLGAMP EEAM+KYI +V +L+P W G + R +D +AS+S+G M
Sbjct: 159 ARAKWQAWQKLGAMPPEEAMEKYIEIVTQLYPTWLDGGVKAGSRGGDD---AASNSRGTM 215
Query: 201 GPVFSSLMYEEEDQGNDSELGDIHVSAREGAIDDIAKHLAAGVEVNMRDSEGRTPLHWAV 260
GPVFSSL+Y+EE + N+ ++ IH AREG ++++ K + +G+ VN RDSEGRTPLHWA+
Sbjct: 216 GPVFSSLVYDEESE-NELKIDAIHGFAREGEVENLLKSIESGIPVNARDSEGRTPLHWAI 274
Query: 261 DRGHLNSVEILXXXXXXXXXXXXEGQTALHYAVLCEREDIAELLVKHHADVQIKDEDGNT 320
DRGHLN ++L EGQT LHYAV+C+RE IAE LVK +A+ KDEDGN+
Sbjct: 275 DRGHLNIAKVLVDKNADVNAKDNEGQTPLHYAVVCDREAIAEFLVKQNANTAAKDEDGNS 334
Query: 321 VRELCPSSWSFM 332
+LC S W ++
Sbjct: 335 PLDLCESDWPWI 346
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 34/39 (87%)
Query: 3 GDWQELAQAAVIGLLFAFLVAKLISTVIAFKEDNLRITR 41
GDW +LAQ+ ++GL+F++L+AKLIS V+ FKEDNL +TR
Sbjct: 2 GDWAQLAQSVILGLIFSYLLAKLISIVVTFKEDNLSLTR 40
>AT4G24230.6 | chr4:12567122-12568754 REVERSE LENGTH=367
Length = 366
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 114 QAQLQLYGLYKIATEGPCTAPQPSALKLKARAKWNAWHKLGAMPTEEAMQKYITVVDELF 173
+A+++L+GL+KIATEG C QP A+ + ARAKWNAW KLG M EEAM++Y+ +V +
Sbjct: 254 EAKMELFGLHKIATEGSCREAQPMAVMISARAKWNAWQKLGNMSQEEAMEQYLALVSKEI 313
Query: 174 PNWSMGSST--KRKDEDTTVSASSSKGPM 200
P + T K + +T+V + G +
Sbjct: 314 PGLTKAGHTVGKMSEMETSVGLPPNSGSL 342
>AT3G05420.2 | chr3:1561880-1567047 FORWARD LENGTH=670
Length = 669
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 109 TSVPEQAQLQLYGLYKIATEGPCTAPQPSALKLKARAKWNAWHKLGAMPTEEAMQKYITV 168
+ P+ L LY LY+ AT GPC P+PSA + ++KW +W LG MP+ EAM+ ++ +
Sbjct: 37 SKFPDDTALLLYALYQQATVGPCNTPKPSAWRPVEQSKWKSWQGLGTMPSIEAMRLFVKI 96
Query: 169 VDELFPNW 176
++E P W
Sbjct: 97 LEEDDPGW 104
>AT2G03430.1 | chr2:1036192-1037536 REVERSE LENGTH=241
Length = 240
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%)
Query: 223 IHVSAREGAIDDIAKHLAAGVEVNMRDSEGRTPLHWAVDRGHLNSVEILXXXXXXXXXXX 282
+H +A +G ++ L G ++N+ D G TPLH A G L E L
Sbjct: 120 LHYAASKGRLEIAQLLLTHGAKINITDKVGCTPLHRAASVGKLEVCEFLIEEGAEIDATD 179
Query: 283 XEGQTALHYAVLCEREDIAELLVKHHADVQIKDEDGNTV 321
GQTAL ++V+C+ + +A LL++H ADV ++D++G TV
Sbjct: 180 KMGQTALMHSVICDDKQVAFLLIRHGADVDVEDKEGYTV 218
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 223 IHVSAREGAIDDIAKHLAAGVE----VNMRDSEGRTPLHWAVDRGHLNSVEILXXXXXXX 278
+HV+A G I K L++ E +N +D EG PLH A G+ VE+L
Sbjct: 51 LHVAASFGH-SQIVKLLSSSDEAKTVINSKDDEGWAPLHSAASIGNAELVEVLLTRGADV 109
Query: 279 XXXXXEGQTALHYAVLCEREDIAELLVKHHADVQIKDEDGNT 320
G+TALHYA R +IA+LL+ H A + I D+ G T
Sbjct: 110 NAKNNGGRTALHYAASKGRLEIAQLLLTHGAKINITDKVGCT 151
>AT5G27630.1 | chr5:9776101-9780780 FORWARD LENGTH=649
Length = 648
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 117 LQLYGLYKIATEGPCTAPQPSALKLKARAKWNAWHKLGAMPTEEAMQKYITVVDELFPNW 176
L LY L++ AT GPC+ P+PSA ++KW +W LG MP+ EAM+ ++ +++E P W
Sbjct: 46 LLLYTLHQQATLGPCSIPKPSAWNPVEQSKWKSWQGLGTMPSIEAMRLFVKILEEADPGW 105
Query: 177 SMGSSTKRKDEDTTVSASSSKGPMGPVFSS 206
+S D V +S+K P F S
Sbjct: 106 YPRTSNSVLDPAVHVQINSTKAE--PSFES 133
>AT1G31812.1 | chr1:11411132-11412099 REVERSE LENGTH=93
Length = 92
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 33/57 (57%)
Query: 117 LQLYGLYKIATEGPCTAPQPSALKLKARAKWNAWHKLGAMPTEEAMQKYITVVDELF 173
L LYGLYK A GP +P +K RAKW+AW + +EEAM YIT V +L
Sbjct: 27 LILYGLYKQAKFGPVDTSRPGMFSMKERAKWDAWKAVEGKSSEEAMNDYITKVKQLL 83
>AT4G35450.5 | chr4:16839862-16841759 FORWARD LENGTH=351
Length = 350
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%)
Query: 223 IHVSAREGAIDDIAKHLAAGVEVNMRDSEGRTPLHWAVDRGHLNSVEILXXXXXXXXXXX 282
+H +A G ++ + LA+G + DSEGRT LH+A G L ++L
Sbjct: 230 VHQTASLGDVEGLKAALASGGNKDEEDSEGRTALHFACGYGELKCAQVLIDAGASVNAVD 289
Query: 283 XEGQTALHYAVLCEREDIAELLVKHHADVQIKDEDGNT 320
T LHYA R++ LL+++ A V +++ D T
Sbjct: 290 KNKNTPLHYAAGYGRKECVSLLLENGAAVTLQNLDEKT 327
>AT5G40160.1 | chr5:16062726-16064301 REVERSE LENGTH=316
Length = 315
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 207 LMYEEEDQGNDSELGDIHVSAREGAIDDIAKHLAAGVEVNMRDSEGRTPLHWAVDRGHLN 266
L ++ D+ N + L + +E I + L G +++D +G P+H+AV G L
Sbjct: 176 LDIDDVDKDNQTALHKAIIGKKEAVISHL---LRKGANPHLQDRDGAAPIHYAVQVGALQ 232
Query: 267 SVEILXXXXXXXXXXXXEGQTALHYAVLCEREDIAELLVKHHADVQIKDEDGNTVREL 324
+V++L EG T LH AV DI ++L+ + AD + +DG +L
Sbjct: 233 TVKLLFKYNVDVNVADNEGWTPLHIAVQSRNRDITKILLTNGADKTRRTKDGKLALDL 290
>AT5G66055.1 | chr5:26417425-26419234 REVERSE LENGTH=436
Length = 435
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 249 DSEGRTPLHWAVDRGHLNSVEILXXXXXXXXXXXXEGQTALHYAVLCEREDIAELLVKHH 308
D EG T +H+AV ++++L +G T LH AV R DI +LL+
Sbjct: 323 DDEGATLMHYAVQTASAPTIKLLLLYNADINAQDRDGWTPLHVAVQARRSDIVKLLLIKG 382
Query: 309 ADVQIKDEDGNTVRELC 325
AD+++K++DG T LC
Sbjct: 383 ADIEVKNKDGLTPLGLC 399
>AT3G58760.1 | chr3:21728756-21731740 FORWARD LENGTH=472
Length = 471
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 42/87 (48%)
Query: 227 AREGAIDDIAKHLAAGVEVNMRDSEGRTPLHWAVDRGHLNSVEILXXXXXXXXXXXXEGQ 286
A EG ID I K L +G V+ RD + RT LH A +G + VE+L G
Sbjct: 57 ANEGDIDGINKMLDSGTNVDYRDIDARTALHVAACQGRTDVVELLLSRGAKVDTKDRWGS 116
Query: 287 TALHYAVLCEREDIAELLVKHHADVQI 313
T L AV + D+ +LL KH A I
Sbjct: 117 TPLADAVYYKNHDVIKLLEKHGAKPTI 143
>AT2G17390.1 | chr2:7555870-7557743 FORWARD LENGTH=345
Length = 344
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%)
Query: 223 IHVSAREGAIDDIAKHLAAGVEVNMRDSEGRTPLHWAVDRGHLNSVEILXXXXXXXXXXX 282
+H +A G ++ + LA+G + DSEGRT LH+A G + ++L
Sbjct: 224 VHQTASLGDVEGLKAALASGGNKDEEDSEGRTALHFACGYGEVRCAQVLLDAGANANAID 283
Query: 283 XEGQTALHYAVLCEREDIAELLVKHHADVQIKDED 317
T LHYA R++ LL+++ A V ++ D
Sbjct: 284 KNKNTPLHYAAGYGRKECVSLLLENGAAVTQQNMD 318
>AT2G14255.1 | chr2:6036974-6040892 FORWARD LENGTH=537
Length = 536
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 223 IHVSAREGA---IDDIAKHLAAGVEVNMRDSEGRTPLHWAVDRGHLNSVEILXXXXXXXX 279
+HV+++ G ++ I AA + N D EGR+PLHWA G +V +L
Sbjct: 128 VHVASQYGQTAFVNHIIVDYAA--DYNALDIEGRSPLHWAAYNGFTETVRLLLFRDACQN 185
Query: 280 XXXXEGQTALHYAVLCEREDIAELLVKHHADVQ----IKDEDGNTVREL 324
G T LH+AV+ E + LLV HA + +KD G+T +L
Sbjct: 186 RQDNTGCTPLHWAVIKENVEACTLLV--HAGTKEELILKDNTGSTPLKL 232
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.130 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,798,682
Number of extensions: 208803
Number of successful extensions: 705
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 714
Number of HSP's successfully gapped: 19
Length of query: 336
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,392,385
Effective search space: 1988995245
Effective search space used: 1988995245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 112 (47.8 bits)