BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0679100 Os04g0679100|AK103034
(301 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G40060.1 | chr2:16726564-16728001 FORWARD LENGTH=259 136 1e-32
AT2G20760.1 | chr2:8943279-8945108 REVERSE LENGTH=339 134 8e-32
AT3G51890.1 | chr3:19249686-19250890 REVERSE LENGTH=259 131 4e-31
>AT2G40060.1 | chr2:16726564-16728001 FORWARD LENGTH=259
Length = 258
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 87/141 (61%), Gaps = 3/141 (2%)
Query: 102 AQMGAEEGILLREWRRQNAIVXXXXXXXXXXXXAQILXXXXXXXXXXXXXRIQNCETNKV 161
++M ++EG LREWRRQNAI QI+ CE NK
Sbjct: 81 SEMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEADQYKEEFHKKIEVTCENNKA 140
Query: 162 HNREREKIFVAGQEKFHAEADKQYWKSISELIPHEIATIEKR---GXXXXXXXPSITVIQ 218
NRE+EK+++ QEKF+AE+ K YWK+I+EL+P E+ TIEKR P+++VIQ
Sbjct: 141 ANREKEKLYLENQEKFYAESSKNYWKAIAELVPKEVPTIEKRRGKKEQQDPKKPTVSVIQ 200
Query: 219 GPKPGKPTDLSRMRQILVKLK 239
GPKPGKPTDL+RMRQILVKLK
Sbjct: 201 GPKPGKPTDLTRMRQILVKLK 221
>AT2G20760.1 | chr2:8943279-8945108 REVERSE LENGTH=339
Length = 338
Score = 134 bits (336), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 78/134 (58%), Gaps = 1/134 (0%)
Query: 107 EEGILLREWRRQNAIVXXXXXXXXXXXXAQILXXXXXXXXXXXXXRIQNCETNKVHNRER 166
EEG REWRR N I QI+ R + ETNK NRE+
Sbjct: 106 EEGFQRREWRRLNTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEKRDKTIETNKTDNREK 165
Query: 167 EKIFVAGQEKFHAEADKQYWKSISELIPHEIATIE-KRGXXXXXXXPSITVIQGPKPGKP 225
EK++ A QEKFH E DK YWK+I+ELIP E+ IE KRG PS+ VIQGPKPGKP
Sbjct: 166 EKLYWANQEKFHKEVDKHYWKAIAELIPREVPNIEKKRGKKDPDKKPSVNVIQGPKPGKP 225
Query: 226 TDLSRMRQILVKLK 239
TDL RMRQI +KLK
Sbjct: 226 TDLGRMRQIFLKLK 239
>AT3G51890.1 | chr3:19249686-19250890 REVERSE LENGTH=259
Length = 258
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 104 MGAEEGILLREWRRQNAIVXXXXXXXXXXXXAQILXXXXXXXXXXXXXRIQNCETNKVHN 163
M EEG LREWRR NA+ QIL R E NK N
Sbjct: 92 MEKEEGFALREWRRLNALRLEEKEKEEKEMVQQILEAAEQYKAEFYSKRNVTIENNKKLN 151
Query: 164 REREKIFVAGQEKFHAEADKQYWKSISELIPHEIATIEKRGXXXXXXXPSITVIQGPKPG 223
RE+EK F+ QEKF+AEADK WK+I+ELIP E+ IE RG +ITVIQGPKPG
Sbjct: 152 REKEKFFLENQEKFYAEADKNNWKAIAELIPREVPVIENRGNKKKTA--TITVIQGPKPG 209
Query: 224 KPTDLSRMRQILVKLK 239
KPTDLSRMRQ+L KLK
Sbjct: 210 KPTDLSRMRQVLTKLK 225
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.129 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,551,540
Number of extensions: 84051
Number of successful extensions: 261
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 3
Length of query: 301
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 203
Effective length of database: 8,419,801
Effective search space: 1709219603
Effective search space used: 1709219603
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)