BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0678800 Os04g0678800|AK072212
(262 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G58130.1 | chr3:21527946-21529654 FORWARD LENGTH=258 251 4e-67
AT2G27340.2 | chr2:11697449-11699120 FORWARD LENGTH=259 249 1e-66
>AT3G58130.1 | chr3:21527946-21529654 FORWARD LENGTH=258
Length = 257
Score = 251 bits (640), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 126/262 (48%), Positives = 169/262 (64%), Gaps = 13/262 (4%)
Query: 5 WMLMAAGAVLLWAVSLGRVL----SSSSPACLPANSTFLSPPRGDRMSRNVLLVLAHPDD 60
W++++ +++W S ++ S S A L T P + +NVL V+AHPDD
Sbjct: 3 WLVVSVSLIVIWLASFCKIFFRATSISGAAILDDGKT---PQK-----KNVLFVIAHPDD 54
Query: 61 ESMFFAPTILFLKSKGHSIHILCLSQGNADGLGNIRKEELYLACVTLKIPAEQVKVLDHS 120
ESMFF+PTI +L S ++H+LCLS GNADG+G+IR EL+ AC LK+P +Q+K+L+H
Sbjct: 55 ESMFFSPTINYLASNACNLHMLCLSTGNADGMGSIRNNELHRACAVLKVPLQQLKILNHP 114
Query: 121 ELQDGFHKNWDHGLIAELTLAQSQLWNIDTIVAFDSRGVSGHPNHCDVHHGICKLLRDNG 180
LQDGF + W H L+ E+ + +I TI+ FD+ GVSGH NH DVH G+ K L+ N
Sbjct: 115 NLQDGFGQLWSHDLLTEIIEEEVTKHDIHTIITFDNYGVSGHCNHRDVHRGVLKFLQTNS 174
Query: 181 QGHIEAWELVSLNIFRKYSGPVDIWXXXXXXXXXKQPTYTLVNNSPSRSFEAMASHKSQW 240
+++AWELVSLNIFRKY GPVDIW ++N P +SF+AMA H SQW
Sbjct: 175 GRNVKAWELVSLNIFRKYCGPVDIWLSILSAKIHPSKV-IIINEQPWKSFKAMAQHLSQW 233
Query: 241 VWFRRLFVLFSSYTYINVLQKI 262
VWFR+LFV FSSYTY N L +I
Sbjct: 234 VWFRKLFVSFSSYTYANTLSRI 255
>AT2G27340.2 | chr2:11697449-11699120 FORWARD LENGTH=259
Length = 258
Score = 249 bits (635), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/251 (49%), Positives = 166/251 (66%), Gaps = 11/251 (4%)
Query: 13 VLLWAVSLGRVLSSSSPACLPANSTFLSPPRGDRMSRNVLLVLAHPDDESMFFAPTILFL 72
V++W S ++ ++ + +T L D +NV+ V+AHPDDESMFF+PTI +
Sbjct: 10 VVIWVASFFKIFFRATSI---SRATIL-----DDGKKNVMFVIAHPDDESMFFSPTINYF 61
Query: 73 KSKGHSIHILCLSQGNADGLGNIRKEELYLACVTLKIPAEQVKVLDHSELQDGFHKNWDH 132
S ++HILC S GNADG+G+IR +EL+ AC LK+P +Q+K+LDH LQDGF + W H
Sbjct: 62 TSTACNLHILCFSTGNADGMGSIRDQELHRACAVLKVPLQQLKILDHPNLQDGFGQLWSH 121
Query: 133 GLIAELTLAQSQLWNIDTIVAFDSRGVSGHPNHCDVHHGICKLLRDNGQGHIEAWELVSL 192
L+ E+ + I TI+ FD+ GV GH NH DVH G+ K L+ N +++AWELVSL
Sbjct: 122 DLLTEIIEEEVTNHYIHTIITFDNYGVWGHCNHRDVHRGVLKFLQTNSGRNVKAWELVSL 181
Query: 193 NIFRKYSGPVDIWXXXXXXXXXKQPT-YTLVNNSPSRSFEAMASHKSQWVWFRRLFVLFS 251
NIFRKY GPVDIW + P+ ++N P +SF+AMA H SQWVWFR+LFVLFS
Sbjct: 182 NIFRKYCGPVDIW--LSILSAKRHPSKVIIINKQPWKSFKAMAQHLSQWVWFRKLFVLFS 239
Query: 252 SYTYINVLQKI 262
SYTY+N L +I
Sbjct: 240 SYTYVNTLDRI 250
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.136 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,067,468
Number of extensions: 244409
Number of successful extensions: 408
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 2
Length of query: 262
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 165
Effective length of database: 8,447,217
Effective search space: 1393790805
Effective search space used: 1393790805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)