BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0669700 Os04g0669700|Os04g0669700
         (245 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22300.1  | chr4:11787560-11789252 REVERSE LENGTH=263          232   2e-61
AT4G22305.1  | chr4:11789546-11791055 REVERSE LENGTH=229          227   5e-60
AT5G20060.2  | chr5:6776800-6779447 FORWARD LENGTH=253             79   3e-15
AT1G52700.1  | chr1:19631186-19633366 REVERSE LENGTH=256           77   6e-15
AT3G15650.2  | chr3:5306006-5307764 FORWARD LENGTH=275             69   2e-12

>AT4G22300.1 | chr4:11787560-11789252 REVERSE LENGTH=263
          Length = 262

 Score =  232 bits (591), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 105/205 (51%), Positives = 148/205 (72%), Gaps = 1/205 (0%)

Query: 13  FVVWLHGLGDTGRANEFLADSFPTTAAFADARWAFPTAPTAPVTCNRGMLMPSWFDIHDA 72
           F++WLHGLGD+G ANE +   F  +  F + +W FP+AP  PV+CN G +MPSWFDI + 
Sbjct: 50  FILWLHGLGDSGPANEPIKTLF-RSQEFRNTKWLFPSAPPNPVSCNYGAVMPSWFDIPEL 108

Query: 73  PITSVSVRDEEDVLRAVQSVHAMIDREIAAGTNPQDVFVFGLSQGGALGIASVLLHPKTL 132
           P+T+ S +DE  +L+AV++VHA+ID+EIA G NP++V++ G SQGGAL +ASVLL+PKT+
Sbjct: 109 PLTAGSPKDESSLLKAVKNVHAIIDKEIAGGINPENVYICGFSQGGALTLASVLLYPKTI 168

Query: 133 GGCAVFSGFLPFNSSFAVRVTAQAKKTPVLWIHGQAGSLIPIKEGRDGIKFLRGLGMSCE 192
           GG AVFSG++PFNSS   + T  AKKTP+LW HG     +  + G+  + FL+  G++CE
Sbjct: 169 GGGAVFSGWIPFNSSITNQFTEDAKKTPILWSHGIDDKTVLFEAGQAALPFLQQAGVTCE 228

Query: 193 FKVYDRLGHSLEYYELDYCQRWVEK 217
           FK Y  LGHS+   EL Y + W+++
Sbjct: 229 FKAYPGLGHSISNEELQYLESWLKQ 253



>AT4G22305.1 | chr4:11789546-11791055 REVERSE LENGTH=229
          Length = 228

 Score =  227 bits (578), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 109/224 (48%), Positives = 150/224 (66%), Gaps = 1/224 (0%)

Query: 13  FVVWLHGLGDTGRANEFLADSFPTTAAFADARWAFPTAPTAPVTCNRGMLMPSWFDIHDA 72
           F++WLHGLGD+G ANE +   F  ++  ++A W FP+AP  PVTCN G +M SWFD+ + 
Sbjct: 5   FILWLHGLGDSGPANEPIQTQF-KSSELSNASWLFPSAPFNPVTCNNGAVMRSWFDVPEL 63

Query: 73  PITSVSVRDEEDVLRAVQSVHAMIDREIAAGTNPQDVFVFGLSQGGALGIASVLLHPKTL 132
           P    S  DE  VL AV++VHA+ID+EIA GTNP++VF+ GLSQGGAL +ASVLL+PKTL
Sbjct: 64  PFKVGSPIDESSVLEAVKNVHAIIDQEIAEGTNPENVFICGLSQGGALTLASVLLYPKTL 123

Query: 133 GGCAVFSGFLPFNSSFAVRVTAQAKKTPVLWIHGQAGSLIPIKEGRDGIKFLRGLGMSCE 192
           GG AV SG++PF SS   +   +AKKTP+LW HG    ++  + G+  + FL+  G++CE
Sbjct: 124 GGGAVLSGWVPFTSSIISQFPEEAKKTPILWSHGTDDRMVLFEAGQAALPFLKEAGVTCE 183

Query: 193 FKVYDRLGHSLEYYELDYCQRWVEKILHRSGREGLIRRVSRNIF 236
           FK Y  LGHS+   EL Y + W+++ L  S    L     + +F
Sbjct: 184 FKAYPGLGHSISNKELKYIESWIKRRLKGSSSTCLQLNCLKEMF 227



>AT5G20060.2 | chr5:6776800-6779447 FORWARD LENGTH=253
          Length = 252

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 94/229 (41%), Gaps = 31/229 (13%)

Query: 14  VVWLHGLGDTGRANEFLADSFPTTAAFADARWAFPTAPTAPVTCNRGMLMPSWFDIHDAP 73
           +VWLHGLGD G +   L ++ P      + +W  PTAP+ P++   G    +WFD+ D  
Sbjct: 36  IVWLHGLGDNGSSWSQLLETLP----LPNIKWICPTAPSQPISLFGGFPSTAWFDVVD-- 89

Query: 74  ITSVSVRDEEDVLRAVQSVHAMIDREIAAGTNPQDVF--VFGLSQGGALGIASVLL---- 127
           I      D E +  A   V  ++  E      P D+   V G S G A  + S       
Sbjct: 90  INEDGPDDMEGLDVAAAHVANLLSNE------PADIKLGVGGFSMGAATSLYSATCFALG 143

Query: 128 -------HPKTLGGCAVFSGFLPFNSSFAVRVTAQAKKT-----PVLWIHGQAGSLIPIK 175
                  +P  L      SG+LP   + A ++  +  K      P++  HG+A  ++P K
Sbjct: 144 KYGNGNPYPINLSAIIGLSGWLPCAKTLAGKLEEEQIKNRAASLPIVVCHGKADDVVPFK 203

Query: 176 EGRDGIKFLRGLGM-SCEFKVYDRLGHSLEYYELDYCQRWVEKILHRSG 223
            G    + L   G     FK Y  LGH     ELD    W+   L   G
Sbjct: 204 FGEKSSQALLSNGFKKVTFKPYSALGHHTIPQELDELCAWLTSTLSLEG 252



>AT1G52700.1 | chr1:19631186-19633366 REVERSE LENGTH=256
          Length = 255

 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 97/231 (41%), Gaps = 34/231 (14%)

Query: 14  VVWLHGLGDTGRANEFLADSFPTTAAFADARWAFPTAPTAPVTCNRGMLMPSWFDIHDAP 73
           +VWLHGLGD G ++  L DS        + +W  PTAP+ PVT   G    +WFD+ +  
Sbjct: 36  LVWLHGLGDNGSSSSQLMDSL----HLPNIKWICPTAPSRPVTSLGGFTCTAWFDVGEIS 91

Query: 74  ITSVSVRDEEDVLRAVQSVHAMIDREIAAGTNPQDVFVFGLSQGGALGIASVLL------ 127
                  D  D L  + +  + I   +++      V + G S G A+ + S         
Sbjct: 92  ------EDGHDDLEGLDASASHIANLLSSEPADVKVGIGGFSMGAAISLYSATCYALGRY 145

Query: 128 -----HPKTLGGCAVFSGFLPFNSSFAVRVTA------QAKKTPVLWIHGQAGSLIPIKE 176
                +P  L      SG+LP   S   ++        +A   P++  HG +  ++P   
Sbjct: 146 GTGHAYPINLQAVVGLSGWLPGWKSLRSKIECSFEAARRAASLPIILTHGTSDDVVPY-- 203

Query: 177 GRDGIKFLRGLGMS----CEFKVYDRLGHSLEYYELDYCQRWVEKILHRSG 223
            R G K  + LGM+      FK Y+ LGH     E+D    W+  +L   G
Sbjct: 204 -RFGEKSAQSLGMAGFRLAMFKPYEGLGHYTVPREMDEVVHWLTTMLGLEG 253



>AT3G15650.2 | chr3:5306006-5307764 FORWARD LENGTH=275
          Length = 274

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 100/248 (40%), Gaps = 46/248 (18%)

Query: 14  VVWLHGLGDTGRANEFLADSFPTTAAFA-----------------DARWAFPTAPTAPVT 56
           +VWLHGLGD G  +  LA S  TT+ F                  + +W  PTAP+ PV+
Sbjct: 36  IVWLHGLGDNG--SRILACSLITTSHFGSVSFCSSSQLLESLPLPNIKWICPTAPSRPVS 93

Query: 57  CNRGMLMPSWFDIHDAPITSVSVRDEEDVLRAVQSVHAMIDREIAAGTNPQDVFVFGLSQ 116
              G    +WFD+ +         D  D +  + +  A I   ++A      V + G S 
Sbjct: 94  LLGGFPCTAWFDVGEIS------EDLHDDIEGLDASAAHIANLLSAEPTDVKVGIGGFSM 147

Query: 117 GGALGIASVLL---------HPKTLGGCAV--FSGFLPFNSSFAVRVTA------QAKKT 159
           G A+ + S            H  T+   A    SG+LP   S   ++ +      +A   
Sbjct: 148 GAAIALYSTTCYALGRYGTGHAYTINLRATVGLSGWLPGWRSLRSKIESSNEVARRAASI 207

Query: 160 PVLWIHGQAGSLIPIKEGRDGIKFLRGLGM-SCEFKVYDRLGHSLEYYELDYCQRWVEKI 218
           P+L  HG +  ++P + G      L   G     FK Y+ LGH     E+D    W   +
Sbjct: 208 PILLAHGTSDDVVPYRFGEKSAHSLAMAGFRQTMFKPYEGLGHYTVPKEMDEVVHW---L 264

Query: 219 LHRSGREG 226
           + R G EG
Sbjct: 265 VSRLGLEG 272



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,530,578
Number of extensions: 223750
Number of successful extensions: 595
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 5
Length of query: 245
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 149
Effective length of database: 8,474,633
Effective search space: 1262720317
Effective search space used: 1262720317
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 110 (47.0 bits)