BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0669600 Os04g0669600|AK110767
(235 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G22300.1 | chr4:11787560-11789252 REVERSE LENGTH=263 227 5e-60
AT4G22305.1 | chr4:11789546-11791055 REVERSE LENGTH=229 222 1e-58
AT5G20060.2 | chr5:6776800-6779447 FORWARD LENGTH=253 83 1e-16
AT1G52700.1 | chr1:19631186-19633366 REVERSE LENGTH=256 70 9e-13
AT3G15650.2 | chr3:5306006-5307764 FORWARD LENGTH=275 64 5e-11
AT1G18773.1 | chr1:6474948-6475398 FORWARD LENGTH=66 48 5e-06
>AT4G22300.1 | chr4:11787560-11789252 REVERSE LENGTH=263
Length = 262
Score = 227 bits (578), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 99/206 (48%), Positives = 141/206 (68%), Gaps = 1/206 (0%)
Query: 12 VLWLHGSGQTGEESRAQVAPYFAAPELASVRFSFPTAPTSSIPCYGGEVITAWFAIPEVP 71
+LWLHG G +G + + F + E + ++ FP+AP + + C G V+ +WF IPE+P
Sbjct: 51 ILWLHGLGDSGPANEP-IKTLFRSQEFRNTKWLFPSAPPNPVSCNYGAVMPSWFDIPELP 109
Query: 72 ITARTARDEKEVLKAVERVHEMLDGEVAAGTSPSNIFVCGLSQGGALAIASVLLYPMTLG 131
+TA + +DE +LKAV+ VH ++D E+A G +P N+++CG SQGGAL +ASVLLYP T+G
Sbjct: 110 LTAGSPKDESSLLKAVKNVHAIIDKEIAGGINPENVYICGFSQGGALTLASVLLYPKTIG 169
Query: 132 GCVVFSGSLPLSKTFAESIPSEARKTPVLWFHGMADGVVLFEAGHAGCAFLQEIGMHCEF 191
G VFSG +P + + +A+KTP+LW HG+ D VLFEAG A FLQ+ G+ CEF
Sbjct: 170 GGAVFSGWIPFNSSITNQFTEDAKKTPILWSHGIDDKTVLFEAGQAALPFLQQAGVTCEF 229
Query: 192 KAYPALGHTLVDEELQYFRQWIKDRL 217
KAYP LGH++ +EELQY W+K R+
Sbjct: 230 KAYPGLGHSISNEELQYLESWLKQRM 255
>AT4G22305.1 | chr4:11789546-11791055 REVERSE LENGTH=229
Length = 228
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 102/206 (49%), Positives = 140/206 (67%), Gaps = 1/206 (0%)
Query: 12 VLWLHGSGQTGEESRAQVAPYFAAPELASVRFSFPTAPTSSIPCYGGEVITAWFAIPEVP 71
+LWLHG G +G + + F + EL++ + FP+AP + + C G V+ +WF +PE+P
Sbjct: 6 ILWLHGLGDSGPANEP-IQTQFKSSELSNASWLFPSAPFNPVTCNNGAVMRSWFDVPELP 64
Query: 72 ITARTARDEKEVLKAVERVHEMLDGEVAAGTSPSNIFVCGLSQGGALAIASVLLYPMTLG 131
+ DE VL+AV+ VH ++D E+A GT+P N+F+CGLSQGGAL +ASVLLYP TLG
Sbjct: 65 FKVGSPIDESSVLEAVKNVHAIIDQEIAEGTNPENVFICGLSQGGALTLASVLLYPKTLG 124
Query: 132 GCVVFSGSLPLSKTFAESIPSEARKTPVLWFHGMADGVVLFEAGHAGCAFLQEIGMHCEF 191
G V SG +P + + P EA+KTP+LW HG D +VLFEAG A FL+E G+ CEF
Sbjct: 125 GGAVLSGWVPFTSSIISQFPEEAKKTPILWSHGTDDRMVLFEAGQAALPFLKEAGVTCEF 184
Query: 192 KAYPALGHTLVDEELQYFRQWIKDRL 217
KAYP LGH++ ++EL+Y WIK RL
Sbjct: 185 KAYPGLGHSISNKELKYIESWIKRRL 210
>AT5G20060.2 | chr5:6776800-6779447 FORWARD LENGTH=253
Length = 252
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 99/226 (43%), Gaps = 31/226 (13%)
Query: 12 VLWLHGSGQTGEESRAQVAPYFAAPELASVRFSFPTAPTSSIPCYGGEVITAWFAIPEVP 71
++WLHG G G S +Q+ P ++++ PTAP+ I +GG TAWF + V
Sbjct: 36 IVWLHGLGDNGS-SWSQLLETLPLP---NIKWICPTAPSQPISLFGGFPSTAWFDV--VD 89
Query: 72 ITARTARDEKEVLKAVERVHEMLDGEVAAGTSPSNIF--VCGLSQGGALAIASVLL---- 125
I D + + A V +L E P++I V G S G A ++ S
Sbjct: 90 INEDGPDDMEGLDVAAAHVANLLSNE------PADIKLGVGGFSMGAATSLYSATCFALG 143
Query: 126 -------YPMTLGGCVVFSGSLPLSKTFA-----ESIPSEARKTPVLWFHGMADGVVLFE 173
YP+ L + SG LP +KT A E I + A P++ HG AD VV F+
Sbjct: 144 KYGNGNPYPINLSAIIGLSGWLPCAKTLAGKLEEEQIKNRAASLPIVVCHGKADDVVPFK 203
Query: 174 AGHAGCAFLQEIGM-HCEFKAYPALGHTLVDEELQYFRQWIKDRLS 218
G L G FK Y ALGH + +EL W+ LS
Sbjct: 204 FGEKSSQALLSNGFKKVTFKPYSALGHHTIPQELDELCAWLTSTLS 249
>AT1G52700.1 | chr1:19631186-19633366 REVERSE LENGTH=256
Length = 255
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 90/225 (40%), Gaps = 30/225 (13%)
Query: 12 VLWLHGSGQTGEESRAQVAPYFAAPELASVRFSFPTAPTSSIPCYGGEVITAWFAIPEVP 71
++WLHG G G S + + L ++++ PTAP+ + GG TAWF + E+
Sbjct: 36 LVWLHGLGDNGSSS----SQLMDSLHLPNIKWICPTAPSRPVTSLGGFTCTAWFDVGEI- 90
Query: 72 ITARTARDEKEVLKA-VERVHEMLDGEVAAGTSPSNIFVCGLSQGGALAIASVLL----- 125
+ D+ E L A + +L E A + + G S G A+++ S
Sbjct: 91 --SEDGHDDLEGLDASASHIANLLSSEPA----DVKVGIGGFSMGAAISLYSATCYALGR 144
Query: 126 ------YPMTLGGCVVFSGSLPLSKTFAESI------PSEARKTPVLWFHGMADGVVLFE 173
YP+ L V SG LP K+ I A P++ HG +D VV +
Sbjct: 145 YGTGHAYPINLQAVVGLSGWLPGWKSLRSKIECSFEAARRAASLPIILTHGTSDDVVPYR 204
Query: 174 AGHAGCAFLQEIGMHCE-FKAYPALGHTLVDEELQYFRQWIKDRL 217
G L G FK Y LGH V E+ W+ L
Sbjct: 205 FGEKSAQSLGMAGFRLAMFKPYEGLGHYTVPREMDEVVHWLTTML 249
>AT3G15650.2 | chr3:5306006-5307764 FORWARD LENGTH=275
Length = 274
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 93/239 (38%), Gaps = 39/239 (16%)
Query: 12 VLWLHGSGQTGEE---------------SRAQVAPYFAAPELASVRFSFPTAPTSSIPCY 56
++WLHG G G S + + L ++++ PTAP+ +
Sbjct: 36 IVWLHGLGDNGSRILACSLITTSHFGSVSFCSSSQLLESLPLPNIKWICPTAPSRPVSLL 95
Query: 57 GGEVITAWFAIPEVPITARTARDEKEVLKAVERVHEMLDGEVAAGTSPSNIFVCGLSQGG 116
GG TAWF + E+ + D + ++ ++ + ++A + + + G S G
Sbjct: 96 GGFPCTAWFDVGEI------SEDLHDDIEGLDASAAHIANLLSAEPTDVKVGIGGFSMGA 149
Query: 117 ALAIASVLLYPM-----------TLGGCVVFSGSLPLSKTFAESIPS------EARKTPV 159
A+A+ S Y + L V SG LP ++ I S A P+
Sbjct: 150 AIALYSTTCYALGRYGTGHAYTINLRATVGLSGWLPGWRSLRSKIESSNEVARRAASIPI 209
Query: 160 LWFHGMADGVVLFEAGHAGCAFLQEIGM-HCEFKAYPALGHTLVDEELQYFRQWIKDRL 217
L HG +D VV + G L G FK Y LGH V +E+ W+ RL
Sbjct: 210 LLAHGTSDDVVPYRFGEKSAHSLAMAGFRQTMFKPYEGLGHYTVPKEMDEVVHWLVSRL 268
>AT1G18773.1 | chr1:6474948-6475398 FORWARD LENGTH=66
Length = 65
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 139 SLPLSKTFAESIPSEA--RKTPVLWFHGMADGVVLFEAGHAGCAFLQEIGMHCEFK 192
++ L F S+ ++A TPVLW HG+ + VLFEAG A FLQ+ G+ EFK
Sbjct: 5 AISLLSPFKLSLAAQAAMEHTPVLWSHGIDEKAVLFEAGQAALPFLQQAGLTYEFK 60
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,317,567
Number of extensions: 215851
Number of successful extensions: 565
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 554
Number of HSP's successfully gapped: 6
Length of query: 235
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 140
Effective length of database: 8,502,049
Effective search space: 1190286860
Effective search space used: 1190286860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)