BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0667000 Os04g0667000|AK069874
         (157 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78690.1  | chr1:29597002-29598409 FORWARD LENGTH=285          169   4e-43
AT3G05510.1  | chr3:1595576-1598074 FORWARD LENGTH=449             77   3e-15

>AT1G78690.1 | chr1:29597002-29598409 FORWARD LENGTH=285
          Length = 284

 Score =  169 bits (429), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 78/130 (60%), Positives = 91/130 (70%), Gaps = 1/130 (0%)

Query: 27  HLGGFPRXXXXXXXXXXXXXXXSLLNTTTVHNADALLRLVSSRPPGTPLLTVSNHMSTMD 86
           HLGG PR               +L N ++VHNAD L+ LV SRPPG PL+TVSNHMST+D
Sbjct: 13  HLGGIPRNTVIMAVSAFAKAVANLCNKSSVHNADTLMNLVQSRPPGVPLITVSNHMSTLD 72

Query: 87  DPLMWG-FKGFPTTDAKLQRWVLTAEDICFRNVFMSYIFRLGKCVPITRGAGIYQDHMTE 145
           DP+MWG FKG  + D +L RWVL AEDICFRN   SYIFR GKC+PITRG GIYQ++M E
Sbjct: 73  DPVMWGAFKGLLSLDPELARWVLAAEDICFRNPIFSYIFRTGKCIPITRGGGIYQENMNE 132

Query: 146 ALEVLSTGDW 155
           AL+ L  G W
Sbjct: 133 ALQRLKDGSW 142



>AT3G05510.1 | chr3:1595576-1598074 FORWARD LENGTH=449
          Length = 448

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 2/107 (1%)

Query: 51  LNTTTVHNADALLRLVSSRPPGTPLLTVSNHMSTMDDPLMWGFKGFPT--TDAKLQRWVL 108
            N   V+  + L   + +RP   PL+TVSNH++++DDP +      P    DA+  RW L
Sbjct: 111 FNRVQVYGLEKLHDALLNRPKNKPLVTVSNHVASVDDPFVIASLLPPKFLLDARNLRWTL 170

Query: 109 TAEDICFRNVFMSYIFRLGKCVPITRGAGIYQDHMTEALEVLSTGDW 155
            A D CF+N   S   R  K +PI+RG GIYQ  M  A+  L+ G W
Sbjct: 171 CATDRCFKNPVTSAFSRSVKVLPISRGEGIYQQGMDIAISKLNNGGW 217



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,633,474
Number of extensions: 93082
Number of successful extensions: 148
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 2
Length of query: 157
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 67
Effective length of database: 8,639,129
Effective search space: 578821643
Effective search space used: 578821643
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)